CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002890939.1
(
Arabidopsis lyrata
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
scaffold_103602.1
T04141_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_103602.1
CCCH ZF
93
118
FKTKLCCKFRAGTCPYITNCNFAHTV
scaffold_103602.1
CCCH ZF
174
200
FKGRHCKKFYTEEGCPYGESCTFLHDE
scaffold_103602.1
CCCH ZF
262
288
WKTRICNKWEITGYCPFGAKCHFAHGA
Links
Other
CCCH ZF
family RBPs
Other
Arabidopsis lyrata
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30054.m000804
Ricinus communis
30054.m000804
N
0.912
AT1G32360
Arabidopsis thaliana
AT1G32360-TAIR-G
N
1.000
BGIOSIBCE026569
Oryza indica
BGIOSIBCE026569
N
0.887
BRADI3G16360
Brachypodium distachyon
BRADI3G16360
N
0.900
BRADI3G16377
Brachypodium distachyon
BRADI3G16377
N
0.900
cassava25690.m1
Manihot esculenta
cassava25690.m1
N
0.912
cassava5467.m1
Manihot esculenta
cassava5467.m1
N
0.900
chr4.LjT10E08.110.nc
Lotus japonicus
chr4.LjT10E08.110.nc
N
0.912
Cucsa.312990
Cucumis sativus
Cucsa.312990
N
0.925
estExt_fgenesh1_pg.C_430142
Physcomitrella patens
estExt_fgenesh1_pg.C_430142
N
0.700
Glyma01g10610.1
Glycine max
Glyma01g10610.1
N
0.925
GSVIVG00013136001
Vitis vinifera
GSVIVG00013136001
N
0.875
gw1.11.272.1
Selaginella moellendorfii
gw1.11.272.1
N
0.725
LOC_Os08g06330
Oryza sativa
LOC_Os08g06330
N
0.887
MDP0000209929
Malus x domestica
MDP0000209929
N
0.875
MDP0000706016
Malus x domestica
MDP0000706016
N
0.887
Medtr8g078060
Medicago truncatula
Medtr8g078060
N
0.925
mgf003951m
Mimulus guttatus
mgf003951m
N
0.912
mgf004101m
Mimulus guttatus
mgf004101m
N
0.912
mgf012162m
Mimulus guttatus
mgf012162m
N
0.925
PK04103.1
Cannabis sativa
PK04103.1
N
0.900
B9MU37_POPTR
Populus trichocarpa
POPTR_0001s02330
N
0.900
B9GZ92_POPTR
Populus trichocarpa
POPTR_0003s09240
N
0.900
ppa008182m
Prunus persica
ppa008182m
N
0.887