XM_002890939.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 scaffold_103602.1 T04141_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_103602.1 CCCH ZF 93 118
scaffold_103602.1 CCCH ZF 174 200
scaffold_103602.1 CCCH ZF 262 288

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30054.m000804 Ricinus communis 30054.m000804 N 0.912
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 1.000
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.887
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.900
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.900
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.912
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.900
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.912
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.925
estExt_fgenesh1_pg.C_430142 Physcomitrella patens estExt_fgenesh1_pg.C_430142 N 0.700
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.925
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.875
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.725
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.887
MDP0000209929 Malus x domestica MDP0000209929 N 0.875
MDP0000706016 Malus x domestica MDP0000706016 N 0.887
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.925
mgf003951m Mimulus guttatus mgf003951m N 0.912
mgf004101m Mimulus guttatus mgf004101m N 0.912
mgf012162m Mimulus guttatus mgf012162m N 0.925
PK04103.1 Cannabis sativa PK04103.1 N 0.900
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.900
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.900
ppa008182m Prunus persica ppa008182m N 0.887