CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
mgf004101m
(
Mimulus guttatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
mgf004101m
T05614_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf004101m
CCCH ZF
93
118
YKTKLCCKFRIGTCPYITNCNFAHNM
mgf004101m
CCCH ZF
171
197
YKGRHCKKFYTEEGCPYGESCTFLHDE
mgf004101m
CCCH ZF
241
267
WKTRICNKWELTGYCPFGTKCHFAHGA
Links
Other
CCCH ZF
family RBPs
Other
Mimulus guttatus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_00209
Chaetomium globosum
CHGG_00209
N
0.000
CHGG_02707
Chaetomium globosum
CHGG_02707
N
0.000
PGTG_03172
Puccinia graminis
PGTG_03172
N
0.000
PGTG_03348
Puccinia graminis
PGTG_03348
N
0.000
PGTG_05307
Puccinia graminis
PGTG_05307
N
0.000
PGTG_05406
Puccinia graminis
PGTG_05406
N
0.000
PGTG_05408
Puccinia graminis
PGTG_05408
N
0.000
PGTG_09834
Puccinia graminis
PGTG_09834
N
0.000
PGTG_12045
Puccinia graminis
PGTG_12045
N
0.000
PGTG_12646
Puccinia graminis
PGTG_12646
N
0.000
PGTG_15116
Puccinia graminis
PGTG_15116
N
0.000
PGTG_16335
Puccinia graminis
PGTG_16335
N
0.000
PGTG_18613
Puccinia graminis
PGTG_18613
N
0.000
PGTG_20442
Puccinia graminis
PGTG_20442
N
0.000
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000
PTTG_03874
Puccinia triticina
PTTG_03874
N
0.000
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.000
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.000
PTTG_07033
Puccinia triticina
PTTG_07033
N
0.000
PTTG_07469
Puccinia triticina
PTTG_07469
N
0.000
PTTG_08330
Puccinia triticina
PTTG_08330
N
0.000
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.000
PTTG_08777
Puccinia triticina
PTTG_08777
N
0.000
PTTG_09789
Puccinia triticina
PTTG_09789
N
0.000
PTTG_10291
Puccinia triticina
PTTG_10291
N
0.000
PTTG_10451
Puccinia triticina
PTTG_10451
N
0.000
PTTG_10552
Puccinia triticina
PTTG_10552
N
0.000
PTTG_10713
Puccinia triticina
PTTG_10713
N
0.000
PTTG_10751
Puccinia triticina
PTTG_10751
N
0.000
PTTG_11057
Puccinia triticina
PTTG_11057
N
0.000
PTTG_11068
Puccinia triticina
PTTG_11068
N
0.000
PTTG_11278
Puccinia triticina
PTTG_11278
N
0.000
PTTG_11299
Puccinia triticina
PTTG_11299
N
0.000
PTTG_11462
Puccinia triticina
PTTG_11462
N
0.000
PTTG_11563
Puccinia triticina
PTTG_11563
N
0.000
SB01G029366
Sorghum bicolor
Sb01g029366
N
0.000
SB01G031795
Sorghum bicolor
Sb01g031795
N
0.000
SB06G012571
Sorghum bicolor
Sb06g012571
N
0.000
SB08G020705
Sorghum bicolor
Sb08g020705
N
0.000