CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Scas_Contig578.9
(
Saccharomyces castellii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Scas_Contig578.9
T05829_0.6
SGD (2003-Oct-3)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig578.9
CCCH ZF
90
115
PKTVVCALFKLGNCNKGKNCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces castellii
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.11049_g
Serpula lacrymans
Genemark.11049_g
N
0.000
Genemark.11600_g
Serpula lacrymans
Genemark.11600_g
N
0.000
Genemark.11725_g
Serpula lacrymans
Genemark.11725_g
N
0.000
Genemark.11784_g
Serpula lacrymans
Genemark.11784_g
N
0.000
Genemark.11813_g
Serpula lacrymans
Genemark.11813_g
N
0.000
Genemark.12016_g
Serpula lacrymans
Genemark.12016_g
N
0.000
Genemark.12031_g
Serpula lacrymans
Genemark.12031_g
N
0.000
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.000
Genemark.1877_g
Serpula lacrymans
Genemark.1877_g
N
0.000
Genemark.2433_g
Serpula lacrymans
Genemark.2433_g
N
0.000
Genemark.2652_g
Serpula lacrymans
Genemark.2652_g
N
0.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.000
Genemark.3124_g
Serpula lacrymans
Genemark.3124_g
N
0.000
Genemark.4399_g
Serpula lacrymans
Genemark.4399_g
N
0.000
Genemark.446_g
Serpula lacrymans
Genemark.446_g
N
0.000
Genemark.469_g
Serpula lacrymans
Genemark.469_g
N
0.000
Genemark.4749_g
Serpula lacrymans
Genemark.4749_g
N
0.000
Genemark.4999_g
Serpula lacrymans
Genemark.4999_g
N
0.000
Genemark.6054_g
Serpula lacrymans
Genemark.6054_g
N
0.000
Genemark.618_g
Serpula lacrymans
Genemark.618_g
N
0.000
Genemark.6548_g
Serpula lacrymans
Genemark.6548_g
N
0.000
Genemark.7257_g
Serpula lacrymans
Genemark.7257_g
N
0.000
Genemark.75_g
Serpula lacrymans
Genemark.75_g
N
0.000
Genemark.8022_g
Serpula lacrymans
Genemark.8022_g
N
0.000
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.000
Genemark.940_g
Serpula lacrymans
Genemark.940_g
N
0.000
Genemark.983_g
Serpula lacrymans
Genemark.983_g
N
0.000