estExt_gwp.C_6160004 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_gwp.C_6160004 T05164_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_6160004 CCCH ZF 104 129

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.923
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.923
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.923
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.923
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.923
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.923
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.923
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.923
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.923
ZC3H15 Homo sapiens ENSG00000065548 N 0.923
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.923
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.923
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.923
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.923
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.923
ZC3H15 Felis catus ENSFCAG00000008213 N 0.923
LOC100068634 Equus caballus ENSECAG00000017149 N 0.923
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.923
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.923
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.923
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.923
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.923
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.923
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.923
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.923
GK21573 Drosophila willistoni FBgn0223565 N 0.923
GD10149 Drosophila simulans FBgn0181924 N 0.923
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.923
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.923
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.923
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.923
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.923
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.923
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.923
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.923
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.923
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.923
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.923
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.923
BAD89267 Xenopus laevis BAD89267 N 0.923
AAH77826 Xenopus laevis AAH77826 N 0.923
Q6DD06 Xenopus laevis Q6DD06 N 0.923
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.923
zc3h15 Danio rerio ENSDARG00000015889 N 0.885
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.885
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.885
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.885
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.885
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.885
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.885
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.885
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.885
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.885
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.885
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.846
72073 Helobdella robusta 72073 N 0.846
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.846
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.846
Minc08580 Meloidogyne incognita Minc08580 N 0.808
CRE20408 Caenorhabditis remanei CRE20408 N 0.808
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.808
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.808
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.808
CJA17052 Caenorhabditis japonica CJA17052 N 0.808
Bm1_13920 Brugia malayi Bm1_13920 N 0.808
CBN03898 Caenorhabditis brenneri CBN03898 N 0.808
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.808
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.808
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.808
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.808
LOAG_00784 Loa loa LOAG_00784 N 0.808
CBG00292 Caenorhabditis briggsae CBG00292 N 0.808
PHUM521160 Pediculus humanus PHUM521160 N 0.808
CBN11546 Caenorhabditis brenneri CBN11546 N 0.808
estExt_Genewise1.C_110154 Neurospora discreta estExt_Genewise1.C_110154 N 0.769
PITG_04608 Phytophthora infestans PITG_04608 N 0.769
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.769
s_451242 Phytophthora sojae s_451242 N 0.769
CAGL0J08679g Candida glabrata CAGL0J08679g N 0.769
PMAA_036360 Penicillium marneffei PMAA_036360 N 0.769
estExt_fgenesh1_pm.C_130118 Neurospora tetrasperma estExt_fgenesh1_pm.C_130118 N 0.769
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.769
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.769
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.769
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.769
fgeneshTA2_pg.C_scaffold_15000146 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_15000146 N 0.769
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.769
SB03G039020 Sorghum bicolor Sb03g039020 N 0.769
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.769
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.769
NCU01795 Neurospora crassa NCU01795 N 0.769
ZYRO0C15598g Zygosaccharomyces rouxii ZYRO0C15598g N 0.769
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.731
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.731
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.731
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.731
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.731
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.731
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.731
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.731
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.731
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.731
29805.m001499 Ricinus communis 29805.m001499 N 0.731
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.731
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.731
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.731
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.731
PK12342.1 Cannabis sativa PK12342.1 N 0.731
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.731
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.731
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.731
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.731
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.731
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.731
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.731
MCYG_02954 Microsporum canis MCYG_02954 N 0.731
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.731
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.731
TERG_01412 Trichophyton rubrum TERG_01412 N 0.731
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.731
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.731
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.731
ZC3H15 Oryctolagus cuniculus ENSOCUG00000027731 N 0.731
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 0.731
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.731
AB07703.1 Alternaria brassicicola AB07703.1 N 0.731
Scas_Contig578.9 Saccharomyces castellii Scas_Contig578.9 N 0.731
A7TLF2_VANPO Vanderwaltozyma polyspora A7TLF2_VANPO N 0.731
fgenesh1_pg.C_scaffold_3139000003 Phytophthora capsici fgenesh1_pg.C_scaffold_3139000003 N 0.731
MDP0000161236 Malus x domestica MDP0000161236 N 0.731
CAOG_04504 Capsaspora owczarzaki CAOG_04504 N 0.731
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.731
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.731
ppa007639m Prunus persica ppa007639m N 0.731
Pc21g03130 Penicillium chrysogenum Pc21g03130 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.731
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.731