zcrb1 (Danio rerio)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSDARG00000045691 T07225_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZCRB1
M085_0.6 		Homo sapiens GRHUUAA RNAcompete
Ray et al.(2013)
RNCMPT00087 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000067171 RRM 12 82
ENSDARP00000067171 CCHC ZF 105 122
ENSDARP00000067173 RRM 12 82
ENSDARP00000067173 CCHC ZF 105 122

Links

Other CCHC ZF,RRM family RBPs
Other Danio rerio RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH75189 Xenopus laevis AAH75189 I 0.775
Ame_R009995 Ailuropoda melanoleuca Ame_R009995 I 0.775
ZCRB1 Anolis carolinensis ENSACAG00000003172 I 0.809
ZCRB1_BOVIN Bos taurus ENSBTAG00000019119 I 0.775
ZCRB1 Canis familiaris ENSCAFG00000009788 I 0.775
LOC100410115 Callithrix jacchus ENSCJAG00000017749 I 0.775
ZCRB1 Cavia porcellus ENSCPOG00000014554 I 0.775
LOC100049989 Equus caballus ENSECAG00000012174 I 0.775
ZCRB1 Homo sapiens ENSG00000139168 D 0.775
ZCRB1 Gasterosteus aculeatus ENSGACG00000018860 I 0.820
ZCRB1 Gallus gallus ENSGALG00000009544 I 0.798
ZCRB1 Gorilla gorilla ENSGGOG00000015647 I 0.775
ZCRB1 Loxodonta africana ENSLAFG00000008847 I 0.798
ZCRB1 Meleagris gallopavo ENSMGAG00000009450 I 0.798
XM_001371517.1 Monodelphis domestica ENSMODG00000006493 I 0.798
ENSMODG00000008893 Monodelphis domestica ENSMODG00000008893 I 0.798
Zcrb1 Mus musculus ENSMUSG00000022635 I 0.775
ZCRB1 Ornithorhynchus anatinus ENSOANG00000009891 I 0.798
ENSOCUG00000026539 Oryctolagus cuniculus ENSOCUG00000026539 I 0.764
ZCRB1 Oryzias latipes ENSORLG00000013088 I 0.843
ZCRB1 Procavia capensis ENSPCAG00000011749 I 0.775
ENSPPYG00000004422 Pongo pygmaeus ENSPPYG00000004422 I 0.775
ZCRB1 Pan troglodytes ENSPTRG00000004838 I 0.775
Zcrb1 Rattus norvegicus ENSRNOG00000004996 I 0.775
ZCRB1 Taeniopygia guttata ENSTGUG00000005829 I 0.798
ZCRB1 Tetraodon nigroviridis ENSTNIG00000018504 I 0.843
ZCRB1 Takifugu rubripes ENSTRUG00000016764 I 0.831
ZCRB1 Tursiops truncatus ENSTTRG00000001378 I 0.764
ZCRB1 Vicugna pacos ENSVPAG00000012040 I 0.764
zcrb1 Xenopus tropicalis ENSXETG00000006796 I 0.775
estExt_fgenesh2_pg.C_670012 Branchiostoma floridae estExt_fgenesh2_pg.C_670012 I 0.742
estExt_GenewiseH_1.C_3120062 Branchiostoma floridae estExt_GenewiseH_1.C_3120062 I 0.742
e_gw1.93.90.1 Lottia gigantea e_gw1.93.90.1 I 0.775
Q6DJI9 Xenopus laevis Q6DJI9 I 0.775