estExt_fgenesh2_pg.C_670012 (Branchiostoma floridae)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		estExt_fgenesh2_pg.C_670012 T07538_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZCRB1
M085_0.6 		Homo sapiens GRHUUAA RNAcompete
Ray et al.(2013)
RNCMPT00087 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_670012 RRM 12 82
estExt_fgenesh2_pg.C_670012 CCHC ZF 105 122

Links

Other CCHC ZF,RRM family RBPs
Other Branchiostoma floridae RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_GenewiseH_1.C_3120062 Branchiostoma floridae estExt_GenewiseH_1.C_3120062 I 1.000
ZCRB1 Tetraodon nigroviridis ENSTNIG00000018504 I 0.787
ZCRB1 Oryzias latipes ENSORLG00000013088 I 0.775
ZCRB1 Gasterosteus aculeatus ENSGACG00000018860 I 0.775
ZCRB1 Takifugu rubripes ENSTRUG00000016764 I 0.775
ZCRB1 Gallus gallus ENSGALG00000009544 I 0.764
ZCRB1 Taeniopygia guttata ENSTGUG00000005829 I 0.764
e_gw1.93.90.1 Lottia gigantea e_gw1.93.90.1 I 0.764
XM_001371517.1 Monodelphis domestica ENSMODG00000006493 I 0.764
ZCRB1 Meleagris gallopavo ENSMGAG00000009450 I 0.764
ENSMODG00000008893 Monodelphis domestica ENSMODG00000008893 I 0.753
ZCRB1 Anolis carolinensis ENSACAG00000003172 I 0.753
ZCRB1 Loxodonta africana ENSLAFG00000008847 I 0.742
fgenesh1_pg.C_scaffold_178000001 Capitella teleta fgenesh1_pg.C_scaffold_178000001 I 0.742
zcrb1 Danio rerio ENSDARG00000045691 I 0.742
ENSPPYG00000004422 Pongo pygmaeus ENSPPYG00000004422 I 0.730
Zcrb1 Rattus norvegicus ENSRNOG00000004996 I 0.730
ZCRB1 Pan troglodytes ENSPTRG00000004838 I 0.730
Q6DJI9 Xenopus laevis Q6DJI9 I 0.730
PHUM370670 Pediculus humanus PHUM370670 I 0.730
ZCRB1 Tursiops truncatus ENSTTRG00000001378 I 0.730
Ame_R009995 Ailuropoda melanoleuca Ame_R009995 I 0.730
AAH75189 Xenopus laevis AAH75189 I 0.730
DGIL_AUG5s13030g1t1 Acyrtosiphon pisum DGIL_AUG5s13030g1t1 N 0.730
Zcrb1 Mus musculus ENSMUSG00000022635 I 0.730
LOC100410115 Callithrix jacchus ENSCJAG00000017749 I 0.730
ZCRB1 Homo sapiens ENSG00000139168 D 0.730
LOC100049989 Equus caballus ENSECAG00000012174 I 0.730
ZCRB1 Canis familiaris ENSCAFG00000009788 I 0.730
ZCRB1 Gorilla gorilla ENSGGOG00000015647 I 0.730
ZCRB1 Ornithorhynchus anatinus ENSOANG00000009891 I 0.730
zcrb1 Xenopus tropicalis ENSXETG00000006796 I 0.730
ZCRB1_BOVIN Bos taurus ENSBTAG00000019119 I 0.730
ZCRB1 Cavia porcellus ENSCPOG00000014554 I 0.730
ENSOCUG00000026539 Oryctolagus cuniculus ENSOCUG00000026539 I 0.719
ZCRB1 Vicugna pacos ENSVPAG00000012040 I 0.719
ZCRB1 Procavia capensis ENSPCAG00000011749 I 0.708