CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA17739
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA17739
T09740_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA17739
CCHC ZF
332
349
RKCFRCGGAGHIAKECTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA02670
Caenorhabditis japonica
CJA02670
N
0.000
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CJA10177
Caenorhabditis japonica
CJA10177
N
0.000
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.000
CJA23650
Caenorhabditis japonica
CJA23650
N
0.000
CJA26146
Caenorhabditis japonica
CJA26146
N
0.000
CJA27243
Caenorhabditis japonica
CJA27243
N
0.000
CJA29053
Caenorhabditis japonica
CJA29053
N
0.000
CPIJ007409
Culex quinquefasciatus
CPIJ007409
N
0.000
CpipJ_CPIJ007409
Culex pipiens
CpipJ_CPIJ007409
N
0.000
CRE03331
Caenorhabditis remanei
CRE03331
N
0.722
CRE06628
Caenorhabditis remanei
CRE06628
N
0.722
CRE08346
Caenorhabditis remanei
CRE08346
N
0.000
CRE09308
Caenorhabditis remanei
CRE09308
N
0.000
CRE13664
Caenorhabditis remanei
CRE13664
N
0.000
CRE13684
Caenorhabditis remanei
CRE13684
N
0.000
CRE19006
Caenorhabditis remanei
CRE19006
N
0.000
CRE24570
Caenorhabditis remanei
CRE24570
N
0.000
CRE29150
Caenorhabditis remanei
CRE29150
N
0.722
CRE30341
Caenorhabditis remanei
CRE30341
N
0.000