CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA17118
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA17118
T09734_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA17118
CCHC ZF
329
346
LKCFRCGGAGHIAKECTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA00265
Caenorhabditis japonica
CJA00265
N
0.944
CJA17375
Caenorhabditis japonica
CJA17375
N
0.944
CJA14117
Caenorhabditis japonica
CJA14117
N
0.944
CJA17739
Caenorhabditis japonica
CJA17739
N
0.944
CJA21035
Caenorhabditis japonica
CJA21035
N
0.944
CJA00955
Caenorhabditis japonica
CJA00955
N
0.889
CJA00525
Caenorhabditis japonica
CJA00525
N
0.889
CJA02670
Caenorhabditis japonica
CJA02670
N
0.722
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.722
CJA26146
Caenorhabditis japonica
CJA26146
N
0.722
Aqu1.224465
Amphimedon queenslandica
Aqu1.224465
N
0.722