CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA14117
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA14117
T09710_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA14117
CCHC ZF
376
393
RKCFRCGGAGHIAKECTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA17739
Caenorhabditis japonica
CJA17739
N
1.000
CJA21035
Caenorhabditis japonica
CJA21035
N
1.000
CJA17375
Caenorhabditis japonica
CJA17375
N
1.000
CJA00265
Caenorhabditis japonica
CJA00265
N
0.944
CJA00955
Caenorhabditis japonica
CJA00955
N
0.944
CJA17118
Caenorhabditis japonica
CJA17118
N
0.944
CJA00525
Caenorhabditis japonica
CJA00525
N
0.833
Aqu1.224465
Amphimedon queenslandica
Aqu1.224465
N
0.778
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CRE29150
Caenorhabditis remanei
CRE29150
N
0.722
CRE03331
Caenorhabditis remanei
CRE03331
N
0.722
CRE06628
Caenorhabditis remanei
CRE06628
N
0.722
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.722