LOC_Os02g40230 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os02g40230 T10956_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g40230.1 CCHC ZF 240 257

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
177549 Helobdella robusta 177549 N 0.000
BRADI3G23364 Brachypodium distachyon BRADI3G23364 N 0.000
BRADI4G42725 Brachypodium distachyon BRADI4G42725 N 0.000
cassava4194.m1 Manihot esculenta cassava4194.m1 N 0.000
CHGG_00235 Chaetomium globosum CHGG_00235 N 0.000
CHGG_06816 Chaetomium globosum CHGG_06816 N 0.000
CJA28798 Caenorhabditis japonica CJA28798 N 0.000
CPSG_00634 Coccidioides posadasii CPSG_00634 N 0.000
DGIL_AUG5s2073g1t1 Acyrtosiphon pisum DGIL_AUG5s2073g1t1 N 0.000
DGIL_AUG5s2421g1t1 Acyrtosiphon pisum DGIL_AUG5s2421g1t1 N 0.000
EuGene8000075 Heterobasidion annosum EuGene8000075 N 0.000
e_gw1.10.905.1 Heterobasidion annosum e_gw1.10.905.1 N 0.000
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.000
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.000
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.000
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.000
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.000
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.000
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.000
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.000
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.000
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.000
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.000
fgenesh1_pg.C_scaffold_32000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_32000002 N 0.000
fgenesh1_pg.C_scaffold_49000015 Phytophthora ramorum fgenesh1_pg.C_scaffold_49000015 N 0.000
fgenesh1_pg.C_scaffold_58000098 Phytophthora ramorum fgenesh1_pg.C_scaffold_58000098 N 0.000
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.000
fgenesh1_pg.C_scaffold_737000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_737000002 N 0.000
fgenesh1_pg.C_scaffold_9000406 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000406 N 0.000
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.000
fgenesh1_pg.C_scaffold_937000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_937000002 N 0.000
fgenesh2_pg.C_scaffold_14000029 Heterobasidion annosum fgenesh2_pg.C_scaffold_14000029 N 0.000
Genemark.5117_g Heterobasidion annosum Genemark.5117_g N 0.000
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.000
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.000
LOC_Os01g70540 Oryza sativa LOC_Os01g70540 N 0.000
LOC_Os04g12000 Oryza sativa LOC_Os04g12000 N 0.000
LOC_Os04g18244 Oryza sativa LOC_Os04g18244 N 0.000
LOC_Os04g24570 Oryza sativa LOC_Os04g24570 N 0.000
LOC_Os05g03600 Oryza sativa LOC_Os05g03600 N 0.000
LOC_Os07g05600 Oryza sativa LOC_Os07g05600 N 0.000
LOC_Os08g28530 Oryza sativa LOC_Os08g28530 N 0.000
LOC_Os08g32590 Oryza sativa LOC_Os08g32590 N 0.000
LOC_Os09g16100 Oryza sativa LOC_Os09g16100 N 0.000
LOC_Os10g07460 Oryza sativa LOC_Os10g07460 N 0.000
LOC_Os10g07578 Oryza sativa LOC_Os10g07578 N 0.000
LOC_Os10g29420 Oryza sativa LOC_Os10g29420 N 0.000
LOC_Os11g06960 Oryza sativa LOC_Os11g06960 N 0.000
LOC_Os11g45610 Oryza sativa LOC_Os11g45610 N 0.000
LOC_Os12g07910 Oryza sativa LOC_Os12g07910 N 0.000
Minc05817 Meloidogyne incognita Minc05817 N 0.000
nasonia_NCBI_hmm181224 Nasonia vitripennis nasonia_NCBI_hmm181224 N 0.000
PK23596.1 Cannabis sativa PK23596.1 N 0.000
SS1G_03724 Sclerotinia sclerotiorum SS1G_03724 N 0.000
SS1G_04258 Sclerotinia sclerotiorum SS1G_04258 N 0.000
SS1G_05465 Sclerotinia sclerotiorum SS1G_05465 N 0.000
SS1G_06437 Sclerotinia sclerotiorum SS1G_06437 N 0.000
SS1G_09531 Sclerotinia sclerotiorum SS1G_09531 N 0.000
SS1G_14025 Sclerotinia sclerotiorum SS1G_14025 N 0.000
SS1G_14517 Sclerotinia sclerotiorum SS1G_14517 N 0.000