CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os06g18800
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os06g18800
T11599_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os06g18800.1
CCHC ZF
579
596
VVCFNCGDPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
598 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
59062
Aureococcus anophagefferens
59062
I
0.000
emb2444
Arabidopsis thaliana
AT2G18510-TAIR-G
I
0.000
cassava31033.valid.m1
Manihot esculenta
cassava31033.valid.m1
I
0.000
Cucsa.251850
Cucumis sativus
Cucsa.251850
I
0.000
estExt_Genewise1Plus.C_00387
Phytophthora capsici
estExt_Genewise1Plus.C_00387
N
0.000
e_gwEuk.5.259.1
Ostreococcus lucimarinus
e_gwEuk.5.259.1
I
0.000
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.000
XM_002886132.1
Arabidopsis lyrata
fgenesh2_kg.3__3460__AT2G18510.1
I
0.000
Glyma09g00310.1
Glycine max
Glyma09g00310.1
I
0.000
Glyma12g36950.1
Glycine max
Glyma12g36950.1
I
0.000
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.000
gw1.05.00.253.1
Ostreococcus tauri
gw1.05.00.253.1
I
0.000
gw1.5.900.1
Ostreococcus RCC809
gw1.5.900.1
I
0.000
MDP0000131129
Malus x domestica
MDP0000131129
I
0.000
MDP0000320945
Malus x domestica
MDP0000320945
I
0.000
Medtr3g087340
Medicago truncatula
Medtr3g087340
I
0.000
PITG_15575
Phytophthora infestans
PITG_15575
N
0.000
PK08238.1
Cannabis sativa
PK08238.1
I
0.000
B9HEU6_POPTR
Populus trichocarpa
POPTR_0007s12570
I
0.000
ppa007508m
Prunus persica
ppa007508m
I
0.000
SPRG_10647
Saprolegnia parasitica
SPRG_10647
N
0.000