LOC_Os06g18800 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os06g18800 T11599_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g18800.1 CCHC ZF 579 596

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

598 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
59062 Aureococcus anophagefferens 59062 I 0.000
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.000
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.000
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.000
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.000
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.000
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.000
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.000
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.000
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.000
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.000
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.000
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.000
MDP0000131129 Malus x domestica MDP0000131129 I 0.000
MDP0000320945 Malus x domestica MDP0000320945 I 0.000
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.000
PITG_15575 Phytophthora infestans PITG_15575 N 0.000
PK08238.1 Cannabis sativa PK08238.1 I 0.000
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.000
ppa007508m Prunus persica ppa007508m I 0.000
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.000