emb2444 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT2G18510-TAIR-G T32690_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.874
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.750
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.720
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G18510.1-P RRM 27 97
AT2G18510.1-P RRM 114 185

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.979
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.916
PK08238.1 Cannabis sativa PK08238.1 I 0.909
MDP0000320945 Malus x domestica MDP0000320945 I 0.902
MDP0000131129 Malus x domestica MDP0000131129 I 0.902
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.895
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.895
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.895
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.895
ppa007508m Prunus persica ppa007508m I 0.888
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.888
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.881
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.874
30183.m001303 Ricinus communis 30183.m001303 I 0.874
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.853
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.853
SB01G020190 Sorghum bicolor Sb01g020190 I 0.853
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.846
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.846
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.839
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.818
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.797
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.790
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.790
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.769
AAH77458 Xenopus laevis AAH77458 I 0.769
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.769
AAH45264 Xenopus laevis AAH45264 I 0.769
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.769
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.762
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.762
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.762
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.762
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.762
ISCW010601 Ixodes scapularis ISCW010601 I 0.762
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.762
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.762
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.762
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.762
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.762
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.762
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.762
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.762
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.762
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.762
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.762
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.762
SF3B4 Gallus gallus ENSGALG00000013352 I 0.762
sf3b4 Danio rerio ENSDARG00000018574 D 0.762
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.762
LOC100054350 Equus caballus ENSECAG00000024737 I 0.762
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.762
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.762
SF3B4 Homo sapiens ENSG00000143368 I 0.762
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.762
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.762
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.762
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.762
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.762
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.762
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.762
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.762
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.762
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.762
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.762
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.762
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.755
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.755
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.755
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.755
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.755
AAEL013795 Aedes aegypti AAEL013795 I 0.748
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.748
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.748
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.748
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.748
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.748
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.748
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.748
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.748
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.748
GH17589 Drosophila grimshawi FBgn0125059 I 0.741
GI16317 Drosophila mojavensis FBgn0139065 I 0.741
GJ15655 Drosophila virilis FBgn0202845 I 0.741
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.741
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.738
AGAP001538 Anopheles gambiae AGAP001538 I 0.734
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.734
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.734
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.734
GE16738 Drosophila yakuba FBgn0234234 I 0.734
GG19577 Drosophila erecta FBgn0111779 I 0.734
GF20385 Drosophila ananassae FBgn0097392 I 0.734
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.734
GK19717 Drosophila willistoni FBgn0221715 I 0.734
GL21313 Drosophila persimilis FBgn0158906 I 0.734
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.727
PHUM263440 Pediculus humanus PHUM263440 I 0.727
Spx Drosophila melanogaster FBgn0015818 I 0.727
GM12470 Drosophila sechellia FBgn0167407 I 0.727
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.720
99199 Helobdella robusta 99199 I 0.720
Smp_067420 Schistosoma mansoni Smp_067420 D 0.720
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.713
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.713
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
59062 Aureococcus anophagefferens 59062 I 0.713
CBN06124 Caenorhabditis brenneri CBN06124 I 0.706
sap-49 Caenorhabditis elegans C08B11.5 D 0.706
CJA19238 Caenorhabditis japonica CJA19238 I 0.706
CRE01639 Caenorhabditis remanei CRE01639 I 0.706
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.706
s_462942 Phytophthora sojae s_462942 N 0.706