59062 (Aureococcus anophagefferens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 59062 T48805_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
59062 RRM 15 85
59062 RRM 102 173

Links

Other RRM family RBPs
Other Aureococcus anophagefferens RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
s_462942 Phytophthora sojae s_462942 N 0.769
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.762
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.755
MDP0000131129 Malus x domestica MDP0000131129 I 0.748
MDP0000320945 Malus x domestica MDP0000320945 I 0.748
ppa007508m Prunus persica ppa007508m I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.741
PK08238.1 Cannabis sativa PK08238.1 I 0.741
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.741
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.741
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.734
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.727
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.727
30183.m001303 Ricinus communis 30183.m001303 I 0.727
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.727
SB01G020190 Sorghum bicolor Sb01g020190 I 0.727
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.727
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.720
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.720
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.720
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.720
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.720
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.720
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.720
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.713
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.713
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.713
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.706
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.706
PITG_15575 Phytophthora infestans PITG_15575 N 0.706