gw1.5.900.1 (Ostreococcus RCC809)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.5.900.1 T53319_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.769
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.736
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.5.900.1 RRM 27 97
gw1.5.900.1 RRM 113 184

Links

Other RRM family RBPs
Other Ostreococcus RCC809 RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.923
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.916
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.804
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.797
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.797
PK08238.1 Cannabis sativa PK08238.1 I 0.797
MDP0000131129 Malus x domestica MDP0000131129 I 0.790
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.790
MDP0000320945 Malus x domestica MDP0000320945 I 0.790
30183.m001303 Ricinus communis 30183.m001303 I 0.783
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.783
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.783
SB01G020190 Sorghum bicolor Sb01g020190 I 0.783
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.783
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.783
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.783
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.783
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.783
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.776
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.776
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.776
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.776
ppa007508m Prunus persica ppa007508m I 0.776
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.769
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.769
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.762
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.755
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.748
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.748
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.748
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.748
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.748
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.748
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.748
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.748
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.748
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.748
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.748
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.748
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.748
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.748
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.748
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.748
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.748
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.748
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.748
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.748
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.748
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.748
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.748
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.748
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.748
sf3b4 Danio rerio ENSDARG00000018574 D 0.748
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.748
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.748
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.748
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.748
LOC100054350 Equus caballus ENSECAG00000024737 I 0.748
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.748
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.748
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.748
SF3B4 Gallus gallus ENSGALG00000013352 I 0.748
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.748
SF3B4 Homo sapiens ENSG00000143368 I 0.748
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.748
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.741
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.741
AAH45264 Xenopus laevis AAH45264 I 0.741
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.741
AAH77458 Xenopus laevis AAH77458 I 0.741
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.741
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.741
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.734
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.724
59062 Aureococcus anophagefferens 59062 I 0.720
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.720
ISCW010601 Ixodes scapularis ISCW010601 I 0.720
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.720
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.720
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.720
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.720
Bm1_43460 Brugia malayi Bm1_43460 I 0.713
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.713
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.713
LOAG_01189 Loa loa LOAG_01189 I 0.713
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.713
GH17589 Drosophila grimshawi FBgn0125059 I 0.713
GI16317 Drosophila mojavensis FBgn0139065 I 0.713
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.713
s_462942 Phytophthora sojae s_462942 N 0.713
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
GJ15655 Drosophila virilis FBgn0202845 I 0.713
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.713
AAEL013795 Aedes aegypti AAEL013795 I 0.713
AGAP001538 Anopheles gambiae AGAP001538 I 0.713
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.706
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.706
GL21313 Drosophila persimilis FBgn0158906 I 0.706
sap-49 Caenorhabditis elegans C08B11.5 D 0.706
CBN06124 Caenorhabditis brenneri CBN06124 I 0.706
CJA19238 Caenorhabditis japonica CJA19238 I 0.706
CRE01639 Caenorhabditis remanei CRE01639 I 0.706
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.706
GF20385 Drosophila ananassae FBgn0097392 I 0.706
PHUM263440 Pediculus humanus PHUM263440 I 0.706
GE16738 Drosophila yakuba FBgn0234234 I 0.706
GK19717 Drosophila willistoni FBgn0221715 I 0.706
GG19577 Drosophila erecta FBgn0111779 I 0.706
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.706