cassava31033.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava31033.valid.m1 T49291_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.930
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.778
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.762
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31033.valid.m1 RRM 27 97
cassava31033.valid.m1 RRM 114 185

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.986
PK08238.1 Cannabis sativa PK08238.1 I 0.986
MDP0000320945 Malus x domestica MDP0000320945 I 0.979
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.979
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.979
MDP0000131129 Malus x domestica MDP0000131129 I 0.979
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.965
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.965
ppa007508m Prunus persica ppa007508m I 0.965
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.958
30183.m001303 Ricinus communis 30183.m001303 I 0.958
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.930
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.923
SB01G020190 Sorghum bicolor Sb01g020190 I 0.923
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.923
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.916
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.916
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.909
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.902
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.895
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.874
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.818
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.818
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.818
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.818
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.811
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.811
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.804
AAH45264 Xenopus laevis AAH45264 I 0.797
ISCW010601 Ixodes scapularis ISCW010601 I 0.797
AAH77458 Xenopus laevis AAH77458 I 0.797
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.797
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.797
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.790
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.790
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.790
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.790
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.790
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.790
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.790
sf3b4 Danio rerio ENSDARG00000018574 D 0.790
LOC100054350 Equus caballus ENSECAG00000024737 I 0.790
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.790
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.790
SF3B4 Homo sapiens ENSG00000143368 I 0.790
SF3B4 Gallus gallus ENSGALG00000013352 I 0.790
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.790
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.790
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.790
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.790
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.790
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.790
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.790
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.790
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.790
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.790
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.790
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.790
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.790
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.790
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.790
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.790
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.790
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.790
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.790
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.790
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.790
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.790
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.790
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.783
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.783
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.783
AGAP001538 Anopheles gambiae AGAP001538 I 0.783
AAEL013795 Aedes aegypti AAEL013795 I 0.783
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.783
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.783
PHUM263440 Pediculus humanus PHUM263440 I 0.783
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.783
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.783
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.783
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.783
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.776
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.776
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.776
GJ15655 Drosophila virilis FBgn0202845 I 0.776
GH17589 Drosophila grimshawi FBgn0125059 I 0.776
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.776
GI16317 Drosophila mojavensis FBgn0139065 I 0.776
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.776
GK19717 Drosophila willistoni FBgn0221715 I 0.769
GG19577 Drosophila erecta FBgn0111779 I 0.769
GF20385 Drosophila ananassae FBgn0097392 I 0.769
GE16738 Drosophila yakuba FBgn0234234 I 0.769
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.769
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.769
GL21313 Drosophila persimilis FBgn0158906 I 0.769
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.766
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.762
99199 Helobdella robusta 99199 I 0.762
Spx Drosophila melanogaster FBgn0015818 I 0.762
Smp_067420 Schistosoma mansoni Smp_067420 D 0.762
GM12470 Drosophila sechellia FBgn0167407 I 0.762
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.755
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.748
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.748
59062 Aureococcus anophagefferens 59062 I 0.741
CJA19238 Caenorhabditis japonica CJA19238 I 0.741
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.741
LOAG_01189 Loa loa LOAG_01189 I 0.741
sap-49 Caenorhabditis elegans C08B11.5 D 0.741
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.741
CRE01639 Caenorhabditis remanei CRE01639 I 0.741
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.741
CBN06124 Caenorhabditis brenneri CBN06124 I 0.741
Bm1_43460 Brugia malayi Bm1_43460 I 0.734
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.734
s_462942 Phytophthora sojae s_462942 N 0.727
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.727
CBG13349 Caenorhabditis briggsae CBG13349 I 0.727
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.727
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.727
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.720
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.720
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.706
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.706
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.706
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.706
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.706
Minc12926 Meloidogyne incognita Minc12926 I 0.706
Minc02568 Meloidogyne incognita Minc02568 I 0.706
Minc01580 Meloidogyne incognita Minc01580 I 0.706