CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g15080
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g15080
T11752_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g15080.1
CCHC ZF
680
697
VDCFNCGEYGHYANNCPH
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
20338_Multiple
Saccharomyces mikatae
20338_Multiple
N
0.000
20661_YOR091W
Saccharomyces paradoxus
20661_YOR091W
N
0.000
22901_YOR091W
Saccharomyces bayanus
22901_YOR091W
N
0.000
A7TLF2_VANPO
Vanderwaltozyma polyspora
A7TLF2_VANPO
N
0.000
AAH77826
Xenopus laevis
AAH77826
N
0.000
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.000
ACL082W
Ashbya gossypii
ACL082W
N
0.000
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.000
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.000
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.000
BAD89267
Xenopus laevis
BAD89267
N
0.000
BGIBMGA011604
Bombyx mori
BGIBMGA011604
N
0.000
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.000
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.000
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.000
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.000
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.000
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.000
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.000
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.000
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.000
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.000
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.000
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.000
ZC3H15
Homo sapiens
ENSG00000065548
N
0.000
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.000
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.000
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.000
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.000
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.000
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.000
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.000
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.000
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.000
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.000
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.000
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.000
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.000
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.000
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.000
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.000
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.000
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.000
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.000
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.000
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.000
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.000
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.000
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.000
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.000
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.000
estExt_fgenesh1_pg.C_70448
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70448
N
0.000
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.000
estExt_fgenesh2_kg.C_60126
Thielavia terrestris
estExt_fgenesh2_kg.C_60126
N
0.000
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.000
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.000
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.000
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.000
estExt_gwp.C_6160004
Branchiostoma floridae
estExt_gwp.C_6160004
N
0.000
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.000
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.000
GD10149
Drosophila simulans
FBgn0181924
N
0.000
GK21573
Drosophila willistoni
FBgn0223565
N
0.000
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.000
KLLA0C13673g
Kluyveromyces lactis
KLLA0C13673g
N
0.000
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.000
Kwal_2969
Kluyveromyces waltii
Kwal_2969
N
0.000
MCYG_02954
Microsporum canis
MCYG_02954
N
0.000
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.000
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.000
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.000
NCU01795
Neurospora crassa
NCU01795
N
0.000
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.000
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.000
Q6DD06
Xenopus laevis
Q6DD06
N
0.000
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.000
SPPG_00188
Spizellomyces punctatus
SPPG_00188
N
0.000
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.000
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.000
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.000
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.000
VDAG_08863
Verticillium dahliae
VDAG_08863
N
0.000
VDBG_05241
Verticillium albo atrum
VDBG_05241
N
0.000
TMA46
Saccharomyces cerevisiae
YOR091W
N
0.000
ZYRO0C15598g
Zygosaccharomyces rouxii
ZYRO0C15598g
N
0.000