Cucsa.051030 (Cucumis sativus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Cucsa.051030 T13485_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.051030.1 CCHC ZF 730 747
Cucsa.051030.2 CCHC ZF 727 744

Links

Other CCHC ZF family RBPs
Other Cucumis sativus RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009003 Ricinus communis 30128.m009003 N 0.833
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.722
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.722
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.778
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.722
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.722
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.722
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.000
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.722
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.833
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.722
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
mgf008200m Mimulus guttatus mgf008200m N 0.778
mgf012653m Mimulus guttatus mgf012653m N 0.000
PK16552.1 Cannabis sativa PK16552.1 N 0.833
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.889
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.889
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.722