ppa001778m (Prunus persica)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 ppa001778m T16223_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa001778m CCHC ZF 745 762

Links

Other CCHC ZF family RBPs
Other Prunus persica RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.944
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.944
PK16552.1 Cannabis sativa PK16552.1 N 0.889
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.889
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.889
30128.m009003 Ricinus communis 30128.m009003 N 0.889
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.889
mgf008200m Mimulus guttatus mgf008200m N 0.833
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.778
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.778
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.778
mgf012653m Mimulus guttatus mgf012653m N 0.778
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.778
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.778
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.778
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.722
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.722
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.722
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.722
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.722
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.722
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.722