30128.m009003 (Ricinus communis)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 30128.m009003 T13216_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30128.m009003 CCHC ZF 751 768

Links

Other CCHC ZF family RBPs
Other Ricinus communis RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.944
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.944
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.889
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.889
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.889
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.889
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.889
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.889
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.889
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.889
ppa001778m Prunus persica ppa001778m N 0.889
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.833
PK16552.1 Cannabis sativa PK16552.1 N 0.833
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.833
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.833
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.833
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.833
mgf008200m Mimulus guttatus mgf008200m N 0.833
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.778
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.778
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.778
estExtDG_fgeneshEH_pg.C_710018 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_710018 N 0.722
estExtDG_fgeneshEH_pg.C_1020080 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_1020080 N 0.722
LOC_Os07g27900 Oryza sativa LOC_Os07g27900 N 0.722
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.722
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.722