XM_002874266.1 (Arabidopsis lyrata)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pm.C_scaffold_6002106 T10644_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6002106 CCHC ZF 727 744

Links

Other CCHC ZF family RBPs
Other Arabidopsis lyrata RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 1.000
LOC_Os07g27900 Oryza sativa LOC_Os07g27900 N 0.778
30128.m009003 Ricinus communis 30128.m009003 N 0.778
LOC_Os01g28490 Oryza sativa LOC_Os01g28490 N 0.778
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.778
LOC_Os12g11730 Oryza sativa LOC_Os12g11730 N 0.722
LOC_Os10g31220 Oryza sativa LOC_Os10g31220 N 0.722
LOC_Os12g10500 Oryza sativa LOC_Os12g10500 N 0.722
LOC_Os12g09400 Oryza sativa LOC_Os12g09400 N 0.722
LOC_Os12g11970 Oryza sativa LOC_Os12g11970 N 0.722
LOC_Os12g12040 Oryza sativa LOC_Os12g12040 N 0.722
LOC_Os12g18250 Oryza sativa LOC_Os12g18250 N 0.722
LOC_Os12g16730 Oryza sativa LOC_Os12g16730 N 0.722
LOC_Os12g15290 Oryza sativa LOC_Os12g15290 N 0.722
LOC_Os12g03304 Oryza sativa LOC_Os12g03304 N 0.722
LOC_Os11g46090 Oryza sativa LOC_Os11g46090 N 0.722
LOC_Os11g01700 Oryza sativa LOC_Os11g01700 N 0.722
LOC_Os10g37468 Oryza sativa LOC_Os10g37468 N 0.722
LOC_Os10g36460 Oryza sativa LOC_Os10g36460 N 0.722
LOC_Os11g16610 Oryza sativa LOC_Os11g16610 N 0.722
LOC_Os11g29610 Oryza sativa LOC_Os11g29610 N 0.722
LOC_Os11g35800 Oryza sativa LOC_Os11g35800 N 0.722
LOC_Os12g26520 Oryza sativa LOC_Os12g26520 N 0.722
LOC_Os10g33570 Oryza sativa LOC_Os10g33570 N 0.722
LOC_Os10g34890 Oryza sativa LOC_Os10g34890 N 0.722
LOC_Os12g41080 Oryza sativa LOC_Os12g41080 N 0.722
ppa001778m Prunus persica ppa001778m N 0.722
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.722
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.722
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.722
PTTG_10751 Puccinia triticina PTTG_10751 N 0.722
PTTG_11057 Puccinia triticina PTTG_11057 N 0.722
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.722
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.722
PK16552.1 Cannabis sativa PK16552.1 N 0.722
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.722
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.722
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.722
LOC_Os10g19290 Oryza sativa LOC_Os10g19290 N 0.722
LOC_Os12g36260 Oryza sativa LOC_Os12g36260 N 0.722
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.722
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.722
fgenesh2_pg.3_#_606 Fragilariopsis cylindrus fgenesh2_pg.3_#_606 N 0.722
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.722
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.722
LOC_Os12g34580 Oryza sativa LOC_Os12g34580 N 0.722
LOC_Os09g18080 Oryza sativa LOC_Os09g18080 N 0.722
LOC_Os03g31200 Oryza sativa LOC_Os03g31200 N 0.722
LOC_Os03g29130 Oryza sativa LOC_Os03g29130 N 0.722
LOC_Os03g14349 Oryza sativa LOC_Os03g14349 N 0.722
LOC_Os03g02500 Oryza sativa LOC_Os03g02500 N 0.722
LOC_Os03g31620 Oryza sativa LOC_Os03g31620 N 0.722
LOC_Os03g56676 Oryza sativa LOC_Os03g56676 N 0.722
LOC_Os04g34960 Oryza sativa LOC_Os04g34960 N 0.722
LOC_Os04g19950 Oryza sativa LOC_Os04g19950 N 0.722
LOC_Os04g13240 Oryza sativa LOC_Os04g13240 N 0.722
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.722
LOC_Os02g27320 Oryza sativa LOC_Os02g27320 N 0.722
LOC_Os02g18310 Oryza sativa LOC_Os02g18310 N 0.722
LOC_Os01g28760 Oryza sativa LOC_Os01g28760 N 0.722
LOC_Os01g16270 Oryza sativa LOC_Os01g16270 N 0.722
LOC_Os01g09050 Oryza sativa LOC_Os01g09050 N 0.722
LOC_Os01g06810 Oryza sativa LOC_Os01g06810 N 0.722
LOC_Os01g32990 Oryza sativa LOC_Os01g32990 N 0.722
LOC_Os01g37410 Oryza sativa LOC_Os01g37410 N 0.722
LOC_Os02g14370 Oryza sativa LOC_Os02g14370 N 0.722
LOC_Os01g58810 Oryza sativa LOC_Os01g58810 N 0.722
LOC_Os01g55660 Oryza sativa LOC_Os01g55660 N 0.722
LOC_Os05g07190 Oryza sativa LOC_Os05g07190 N 0.722
LOC_Os05g10510 Oryza sativa LOC_Os05g10510 N 0.722
LOC_Os07g39380 Oryza sativa LOC_Os07g39380 N 0.722
LOC_Os07g38350 Oryza sativa LOC_Os07g38350 N 0.722
LOC_Os07g36270 Oryza sativa LOC_Os07g36270 N 0.722
LOC_Os06g47810 Oryza sativa LOC_Os06g47810 N 0.722
LOC_Os08g05150 Oryza sativa LOC_Os08g05150 N 0.722
LOC_Os08g06850 Oryza sativa LOC_Os08g06850 N 0.722
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.722
LOC_Os08g14340 Oryza sativa LOC_Os08g14340 N 0.722
LOC_Os08g14170 Oryza sativa LOC_Os08g14170 N 0.722
LOC_Os06g42300 Oryza sativa LOC_Os06g42300 N 0.722
LOC_Os06g35840 Oryza sativa LOC_Os06g35840 N 0.722
LOC_Os06g13500 Oryza sativa LOC_Os06g13500 N 0.722
LOC_Os06g05460 Oryza sativa LOC_Os06g05460 N 0.722
LOC_Os05g27770 Oryza sativa LOC_Os05g27770 N 0.722
LOC_Os05g15810 Oryza sativa LOC_Os05g15810 N 0.722
LOC_Os06g19040 Oryza sativa LOC_Os06g19040 N 0.722
LOC_Os06g23860 Oryza sativa LOC_Os06g23860 N 0.722
LOC_Os06g34090 Oryza sativa LOC_Os06g34090 N 0.722
LOC_Os06g29600 Oryza sativa LOC_Os06g29600 N 0.722
LOC_Os06g25910 Oryza sativa LOC_Os06g25910 N 0.722
LOC_Os10g03300 Oryza sativa LOC_Os10g03300 N 0.722