fgenesh1_pg.C_scaffold_3000233 (Neurospora tetrasperma)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_3000233 T13915_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_3000233 CCHC ZF 267 284

Links

Other CCHC ZF family RBPs
Other Neurospora tetrasperma RBPs

6 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.000
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.000
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.000
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.000
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.000
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.000
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.000
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.000
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.000
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.000
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.000
MDP0000320891 Malus x domestica MDP0000320891 N 0.000
MDP0000673185 Malus x domestica MDP0000673185 N 0.000
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.000
mgf012825m Mimulus guttatus mgf012825m N 0.000
PK25575.1 Cannabis sativa PK25575.1 N 0.000
SB08G016640 Sorghum bicolor Sb08g016640 N 0.000
SB09G002390 Sorghum bicolor Sb09g002390 N 0.000