BGIOSIBCE017416 (Oryza indica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BGIOSIBCE017416 T01949_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE017416 CCCH ZF 234 257

Links

Other CCCH ZF family RBPs
Other Oryza indica RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 1.000
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.958
SB09G002390 Sorghum bicolor Sb09g002390 N 0.917
MDP0000678327 Malus x domestica MDP0000678327 N 0.875
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.840
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.833
29681.m001358 Ricinus communis 29681.m001358 N 0.833
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.833
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.833
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.833
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.833
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.833
MDP0000588193 Malus x domestica MDP0000588193 N 0.833
ppa002415m Prunus persica ppa002415m N 0.833
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.833
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.833
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.833
PK15838.1 Cannabis sativa PK15838.1 N 0.833
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.833
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.833
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.833
PK05226.1 Cannabis sativa PK05226.1 N 0.833
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.792
GRMZM2G027298 Zea mays GRMZM2G027298 N 0.792
Glyma18g06980.1 Glycine max Glyma18g06980.1 N 0.792
MDP0000699611 Malus x domestica MDP0000699611 N 0.792
PK25575.1 Cannabis sativa PK25575.1 N 0.792
ppa002251m Prunus persica ppa002251m N 0.792
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.792
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.792
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.792
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.792
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.792
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.792
SB08G016640 Sorghum bicolor Sb08g016640 N 0.792
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.792
LOC_Os12g33090 Oryza sativa LOC_Os12g33090 N 0.792
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 0.792
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.792
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.792
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.792
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.750
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.750
mgf012825m Mimulus guttatus mgf012825m N 0.750
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.750
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.750
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.750
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.750
MDP0000196475 Malus x domestica MDP0000196475 N 0.750
MDP0000320891 Malus x domestica MDP0000320891 N 0.750
MDP0000673185 Malus x domestica MDP0000673185 N 0.750
Glyma11g27130.1 Glycine max Glyma11g27130.1 N 0.750
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.750
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.708
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.708
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.708
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.708
mgf009145m Mimulus guttatus mgf009145m N 0.708
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.708