LOC_Os12g33090 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os12g33090 T03975_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g33090.1 CCCH ZF 217 240

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G027298 Zea mays GRMZM2G027298 N 1.000
SB08G016640 Sorghum bicolor Sb08g016640 N 1.000
BRADI4G06290 Brachypodium distachyon BRADI4G06290 N 1.000
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.792
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.792
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.792
PK25575.1 Cannabis sativa PK25575.1 N 0.792
SB09G002390 Sorghum bicolor Sb09g002390 N 0.792
mgf012825m Mimulus guttatus mgf012825m N 0.750
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.750
MDP0000673185 Malus x domestica MDP0000673185 N 0.750
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.750
MDP0000320891 Malus x domestica MDP0000320891 N 0.750
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.750
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.720
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.708
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.708
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.708