CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.1.3735.1
(
Myceliophthora thermophila
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
e_gw1.1.3735.1
T20738_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.1.3735.1
KH
247
318
TVFEPSMHQLLCGRNRKNIKLIESVTNTAIYFPPPFSACYRYCPPNAQRRDPSKVLITGENPQDIEQAKFRI
e_gw1.1.3735.1
KH
416
452
AMLGDICANSDAEVSFDRQSFSITGSDESVKAALMVI
e_gw1.1.3735.1
KH
466
526
RVRIELANEHKEFVSGKKNGKINKIMGNSNVQIMFDNFGEYNFNIEVIAQAYDSLKQGLSL
e_gw1.1.3735.1
KH
534
603
SISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFSNAMDRGGMGREDDDSRVDNVICRTPARNAQNLEL
e_gw1.1.3735.1
KH
640
670
EIEELERTWNCKIVFPSTEQASDEITVTGPQ
Links
Other
KH
family RBPs
Other
Myceliophthora thermophila
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_670017
Neurospora tetrasperma
estExt_fgenesh1_pg.C_670017
N
0.730
estExt_fgenesh2_pg.C_120096
Neurospora discreta
estExt_fgenesh2_pg.C_120096
N
0.730
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.720
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.726
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.707
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.707
NCU05266
Neurospora crassa
NCU05266
N
0.730
Pa_3_4120
Podospora anserina
Pa_3_4120
N
0.775