CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AO090005001419
(
Aspergillus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAORAG00003299
T33677_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAORAP00003242
RRM
4
74
LFIGGLAWHTTDESLRSGFEKYGAVEEAIVVKDRDTGRSRGFGFVRFSSEADAEAAAHEMNNQEFDGRTIR
Links
Other
RRM
family RBPs
Other
Aspergillus oryzae
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_01954
Blastomyces dermatitidis
BDBG_01954
N
0.761
ACLA_036560
Aspergillus clavatus
CADACLAG00003885
N
0.803
AFLA_086540
Aspergillus flavus
CADAFLAG00001433
N
1.000
AFUA_3G08580
Aspergillus fumigatus
CADAFUAG00005852
N
0.817
An02g12270
Aspergillus niger
CADANGAG00002750
N
0.761
ANIA_02989
Aspergillus nidulans
CADANIAG00010091
N
0.761
ATEG_01614
Aspergillus terreus
CADATEAG00002872
N
0.732
NFIA_068550
Neosartorya fischeri
CADNFIAG00006348
N
0.817
CIMG_07653
Coccidioides immitis
CIMG_07653
N
0.831
CPSG_09452
Coccidioides posadasii
CPSG_09452
N
0.831
estExt_fgenesh1_kg.C_chr_50164
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_50164
N
0.761
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.761
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.775
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.732
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.718
e_gw1.00866.790.1
Aspergillus carbonarius
e_gw1.00866.790.1
N
0.718
FGSG_00442
Fusarium graminearum
FGSG_00442
N
0.704
FOXG_00610
Fusarium oxysporum
FOXG_00610
N
0.718
FVEG_00902
Fusarium verticillioides
FVEG_00902
N
0.718
genemark.1698_g
Thielavia terrestris
genemark.1698_g
N
0.704
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.718
GSTUMT00008723001
Tuber melanosporum
GSTUMT00008723001
N
0.704
MCYG_06115
Microsporum canis
MCYG_06115
N
0.775
MGYG_01973
Microsporum gypseum
MGYG_01973
N
0.789
PABG_01590
Paracoccidioides brasiliensis
PABG_01590
N
0.761
Pc06g01290
Penicillium chrysogenum
Pc06g01290
N
0.718
PMAA_013050
Penicillium marneffei
PMAA_013050
N
0.775
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.704
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.732
TERG_04706
Trichophyton rubrum
TERG_04706
N
0.775
TESG_06069
Trichophyton tonsurans
TESG_06069
N
0.775
UREG_07630
Uncinocarpus reesii
UREG_07630
N
0.803
VDAG_03252
Verticillium dahliae
VDAG_03252
N
0.761