ENSCSAVG00000005130 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000005130 T35981_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.722
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.722
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.722
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000008618 RRM 10 80

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018426 Ailuropoda melanoleuca Ame_R018426 I 0.000
RBM41 Bos taurus ENSBTAG00000000955 I 0.000
LOC100405722 Callithrix jacchus ENSCJAG00000007957 I 0.000
RBM41 Cavia porcellus ENSCPOG00000025052 I 0.000
RBM41 Dasypus novemcinctus ENSDNOG00000013865 I 0.000
Rbm41 Dipodomys ordii ENSDORG00000008077 I 0.000
LOC100060588 Equus caballus ENSECAG00000021846 I 0.000
RBM41 Erinaceus europaeus ENSEEUG00000006722 I 0.000
RBM41 Echinops telfairi ENSETEG00000019681 I 0.000
RBM41 Homo sapiens ENSG00000089682 D 0.000
RBM41 Gorilla gorilla ENSGGOG00000006587 I 0.000
RBM41 Loxodonta africana ENSLAFG00000028266 I 0.000
RBM41 Macropus eugenii ENSMEUG00000002663 N 0.000
RBM41 Microcebus murinus ENSMICG00000009750 I 0.000
RBM41 Macaca mulatta ENSMMUG00000023172 I 0.000
RBM41 Monodelphis domestica ENSMODG00000002312 I 0.000
Rbm41 Mus musculus ENSMUSG00000031433 I 0.000
RBM41 Oryctolagus cuniculus ENSOCUG00000015937 I 0.000
RBM41 Procavia capensis ENSPCAG00000003991 I 0.000
ENSPPYG00000020609 Pongo pygmaeus ENSPPYG00000020609 I 0.000
RBM41 Pan troglodytes ENSPTRG00000022158 I 0.000
RBM41 Pteropus vampyrus ENSPVAG00000001786 I 0.000
Rbm41 Rattus norvegicus ENSRNOG00000012590 I 0.000
RBM41 Sorex araneus ENSSARG00000004377 I 0.000
RBM41 Sus scrofa ENSSSCG00000012556 I 0.000
RBM41 Tarsius syrichta ENSTSYG00000006980 I 0.000
RBM41 Vicugna pacos ENSVPAG00000003647 I 0.000