ENSCSAVG00000005130 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000005130 T35981_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.722
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.722
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.722
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000008618 RRM 10 80

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Srsf12 Mus musculus ENSMUSG00000054679 I 0.775
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.775
AAH46695 Xenopus laevis AAH46695 I 0.775
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.761
AAH84231 Xenopus laevis AAH84231 I 0.746
SRSF12 Homo sapiens ENSG00000154548 I 0.746
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.746
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.740
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.740
CR293507.1 Danio rerio ENSDARG00000022415 I 0.736
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.736
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.736
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.736
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.736
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.736
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.736
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.736
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.726
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.726
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.726
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.726
Fusip1 Homo sapiens ENSG00000188529 D 0.722
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.722
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.722
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.722
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.722
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.722
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.722
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.722
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.722
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.722
Srsf10 Mus musculus ENSMUSG00000028676 I 0.722
BX511012.1 Homo sapiens ENSG00000215699 I 0.722
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.722
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.722
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.722
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.722
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.722
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.722
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.722
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.722
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.722
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.722
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.708
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.708
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.708
XM_547294.2 Canis familiaris ENSCAFG00000003095 I 0.708
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.707
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.704