SFPQ (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000001095 T36866_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000000888 RRM 298 362
ENSETEP00000000888 RRM 372 439

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_04655 Chaetomium globosum CHGG_04655 N 0.000
estExt_fgenesh1_pg.C_30620 Cryphonectria parasitica estExt_fgenesh1_pg.C_30620 N 0.000
e_gw1.2.858.1 Trichoderma reesei e_gw1.2.858.1 N 0.000
e_gw1.3.1867.1 Neurospora discreta e_gw1.3.1867.1 N 0.000
fgenesh1_pg.C_scaffold_2000270 Trichoderma atroviride fgenesh1_pg.C_scaffold_2000270 N 0.000
fgenesh1_pm.1_#_413 Myceliophthora thermophila fgenesh1_pm.1_#_413 N 0.000
fgenesh1_pm.C_scaffold_4000255 Neurospora tetrasperma fgenesh1_pm.C_scaffold_4000255 N 0.000
fgenesh2_pg.1_#_466 Thielavia terrestris fgenesh2_pg.1_#_466 N 0.000
FOXG_08275 Fusarium oxysporum FOXG_08275 N 0.000
GLRG_05733 Colletotrichum graminicola GLRG_05733 N 0.000
gw1.1.1031.1 Trichoderma virens gw1.1.1031.1 N 0.000
NCU09742 Neurospora crassa NCU09742 N 0.000
VDBG_08298 Verticillium albo atrum VDBG_08298 N 0.000