PABPC1L (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002792 T37401_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.830
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.830
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.830
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.787
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000003653 RRM 13 83
ENSGACP00000003653 RRM 101 169
ENSGACP00000003653 RRM 193 262
ENSGACP00000003653 RRM 296 364

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.839
AAEL010318 Aedes aegypti AAEL010318 I 0.703
AAH52100 Xenopus laevis AAH52100 I 0.842
AAH71118 Xenopus laevis AAH71118 I 0.853
AAH72110 Xenopus laevis AAH72110 I 0.846
AAH73435 Xenopus laevis AAH73435 I 0.803
AAH80020 Xenopus laevis AAH80020 I 0.860
AAI08463 Xenopus laevis AAI08463 I 0.846
AAK29408 Xenopus laevis AAK29408 I 0.860
AGAP011092 Anopheles gambiae AGAP011092 I 0.721
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.728
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.728
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.728
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.835
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.785
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.742
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.722
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.731
CAA40721 Xenopus laevis CAA40721 I 0.842
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.710
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.710
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.742
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.849
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.857
PABPC1L Bos taurus ENSBTAG00000016849 I 0.789
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.803
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.853
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.803
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.731
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.799
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.853
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.774
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.824
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.803
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.714
pabpc1l Danio rerio ENSDARG00000002597 I 0.889
pabpc1a Danio rerio ENSDARG00000017219 I 0.842
pabpc1b Danio rerio ENSDARG00000021140 I 0.836
pabpc4 Danio rerio ENSDARG00000059259 I 0.796
LOC100054235 Equus caballus ENSECAG00000009396 I 0.803
LOC100056021 Equus caballus ENSECAG00000020699 I 0.738
LOC100070836 Equus caballus ENSECAG00000022681 I 0.774
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.792
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.760
PABPC1 Homo sapiens ENSG00000070756 D 0.853
PABPC4 Homo sapiens ENSG00000090621 D 0.799
PABPC1L Homo sapiens ENSG00000101104 I 0.774
PABPC3 Homo sapiens ENSG00000151846 D 0.806
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.846
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.821
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.792
PABPC4 Gallus gallus ENSGALG00000003800 I 0.803
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.799
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.774
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.803
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.781
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.853
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.806
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.824
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.803
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.774
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.720
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.771
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.799
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.778
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.853
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.814
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.850
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.749
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.832
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.832
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.789
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.789
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.857
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.799
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.803
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.746
Gm10110 Mus musculus ENSMUSG00000062093 I 0.792
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.857
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.796
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.799
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.853
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.853
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.853
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.781
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.799
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.853
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.835
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.859
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.781
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.720
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.799
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.821
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.774
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.853
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.799
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.778
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.849
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.810
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.853
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.857
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.746
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.803
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.799
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.806
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.778
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.803
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.853
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.792
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.713
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.799
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.814
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.857
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.832
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.818
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.789
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.866
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.828
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.792
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.950
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.849
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.832
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.853
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.756
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.846
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.746
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.839
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.717
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.707
GI18654 Drosophila mojavensis FBgn0141393 I 0.701
ISCW014211 Ixodes scapularis ISCW014211 I 0.711
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.710
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.710
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.710
P20965 Xenopus laevis P20965 I 0.842
PHUM617090 Pediculus humanus PHUM617090 I 0.717
Q6GR16 Xenopus laevis Q6GR16 I 0.853
Q6IP09 Xenopus laevis Q6IP09 I 0.846
Q98SP8 Xenopus laevis Q98SP8 I 0.860