PABPC1L (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002792 T37401_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.830
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.830
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.830
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.787
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000003653 RRM 13 83
ENSGACP00000003653 RRM 101 169
ENSGACP00000003653 RRM 193 262
ENSGACP00000003653 RRM 296 364

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH81007 Xenopus laevis AAH81007 N 0.000
Ame_R003783 Ailuropoda melanoleuca Ame_R003783 N 0.000
RBM18_BOVIN Bos taurus ENSBTAG00000016367 N 0.000
RBM18 Canis familiaris ENSCAFG00000020274 N 0.000
RBM18 Choloepus hoffmanni ENSCHOG00000001341 N 0.000
LOC100393108 Callithrix jacchus ENSCJAG00000020116 N 0.000
RBM18 Cavia porcellus ENSCPOG00000013811 N 0.000
Rbm18 Dipodomys ordii ENSDORG00000015862 N 0.000
RBM18 Echinops telfairi ENSETEG00000009832 N 0.000
RBM18 Felis catus ENSFCAG00000011188 N 0.000
RBM18 Homo sapiens ENSG00000119446 N 0.000
RBM18 Gallus gallus ENSGALG00000001339 N 0.000
RBM18 Gorilla gorilla ENSGGOG00000011052 N 0.000
RBM18 Loxodonta africana ENSLAFG00000012134 N 0.000
RBM18 Macaca mulatta ENSMMUG00000011455 N 0.000
RBM18 Monodelphis domestica ENSMODG00000019688 N 0.000
Rbm18 Mus musculus ENSMUSG00000026889 N 0.000
RBM18 Ornithorhynchus anatinus ENSOANG00000008200 N 0.000
RBM18 Oryctolagus cuniculus ENSOCUG00000008527 N 0.000
RBM18 Otolemur garnettii ENSOGAG00000015104 N 0.000
RBM18 Ochotona princeps ENSOPRG00000010381 N 0.000
RBM18 Procavia capensis ENSPCAG00000011245 N 0.000
ENSPPYG00000019569 Pongo pygmaeus ENSPPYG00000019569 N 0.000
RBM18 Pan troglodytes ENSPTRG00000021323 N 0.000
RBM18 Pteropus vampyrus ENSPVAG00000000863 N 0.000
Rbm18 Rattus norvegicus ENSRNOG00000006763 N 0.000
RBM18 Sus scrofa ENSSSCG00000005531 N 0.000
RBM18 Tupaia belangeri ENSTBEG00000016520 N 0.000
RBM18 Vicugna pacos ENSVPAG00000008618 N 0.000
rbm18 Xenopus tropicalis ENSXETG00000016328 N 0.000
Q66J99 Xenopus laevis Q66J99 N 0.000