CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000002792
T37401_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.830
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.830
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.830
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.787
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.777
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000003653
RRM
13
83
LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYDVIKGRPIR
ENSGACP00000003653
RRM
101
169
IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVF
ENSGACP00000003653
RRM
193
262
VYIKNFGEDYTDEKLKELFTAFGRTLSVRVMKDERGRSRGFGFVNYADHEDAQKAVDEMNGKDLNGKVLY
ENSGACP00000003653
RRM
296
364
LYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
145 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH81007
Xenopus laevis
AAH81007
N
0.000
Ame_R003783
Ailuropoda melanoleuca
Ame_R003783
N
0.000
RBM18_BOVIN
Bos taurus
ENSBTAG00000016367
N
0.000
RBM18
Canis familiaris
ENSCAFG00000020274
N
0.000
RBM18
Choloepus hoffmanni
ENSCHOG00000001341
N
0.000
LOC100393108
Callithrix jacchus
ENSCJAG00000020116
N
0.000
RBM18
Cavia porcellus
ENSCPOG00000013811
N
0.000
Rbm18
Dipodomys ordii
ENSDORG00000015862
N
0.000
RBM18
Echinops telfairi
ENSETEG00000009832
N
0.000
RBM18
Felis catus
ENSFCAG00000011188
N
0.000
RBM18
Homo sapiens
ENSG00000119446
N
0.000
RBM18
Gallus gallus
ENSGALG00000001339
N
0.000
RBM18
Gorilla gorilla
ENSGGOG00000011052
N
0.000
RBM18
Loxodonta africana
ENSLAFG00000012134
N
0.000
RBM18
Macaca mulatta
ENSMMUG00000011455
N
0.000
RBM18
Monodelphis domestica
ENSMODG00000019688
N
0.000
Rbm18
Mus musculus
ENSMUSG00000026889
N
0.000
RBM18
Ornithorhynchus anatinus
ENSOANG00000008200
N
0.000
RBM18
Oryctolagus cuniculus
ENSOCUG00000008527
N
0.000
RBM18
Otolemur garnettii
ENSOGAG00000015104
N
0.000
RBM18
Ochotona princeps
ENSOPRG00000010381
N
0.000
RBM18
Procavia capensis
ENSPCAG00000011245
N
0.000
ENSPPYG00000019569
Pongo pygmaeus
ENSPPYG00000019569
N
0.000
RBM18
Pan troglodytes
ENSPTRG00000021323
N
0.000
RBM18
Pteropus vampyrus
ENSPVAG00000000863
N
0.000
Rbm18
Rattus norvegicus
ENSRNOG00000006763
N
0.000
RBM18
Sus scrofa
ENSSSCG00000005531
N
0.000
RBM18
Tupaia belangeri
ENSTBEG00000016520
N
0.000
RBM18
Vicugna pacos
ENSVPAG00000008618
N
0.000
rbm18
Xenopus tropicalis
ENSXETG00000016328
N
0.000
Q66J99
Xenopus laevis
Q66J99
N
0.000