CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPN1L
(
Myotis lucifugus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMLUG00000003228
T38637_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000002935
RRM
142
210
MYVGNVDYRVTAEELEAYFNICGEVQQVTILCNKFSGHPKGYAYIEFATSSAQAAVGLDKSIFQGRVIK
Links
Other
RRM
family RBPs
Other
Myotis lucifugus
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPN1L
Bos taurus
ENSBTAG00000023752
N
0.829
PABPN1L
Cavia porcellus
ENSCPOG00000025951
I
0.746
LOC100051357
Equus caballus
ENSECAG00000000378
I
0.789
PABPN1L
Erinaceus europaeus
ENSEEUG00000004747
N
0.729
PABPN1L
Homo sapiens
ENSG00000205022
I
0.757
PABPN1
Gallus gallus
ENSGALG00000006242
I
0.743
PABPN1L
Loxodonta africana
ENSLAFG00000025902
I
0.757
XM_001100533.1
Macaca mulatta
ENSMMUG00000012438
I
0.757
XM_001117810.1
Macaca mulatta
ENSMMUG00000029383
I
0.757
Pabpn1l
Mus musculus
ENSMUSG00000069867
N
0.714
PABPN1L
Ornithorhynchus anatinus
ENSOANG00000013901
I
0.729
PABPN1L
Otolemur garnettii
ENSOGAG00000000433
I
0.789
PABPN1L
Ochotona princeps
ENSOPRG00000005597
I
0.814
ENSPPYG00000007655
Pongo pygmaeus
ENSPPYG00000007655
I
0.757
PABPN1L
Pan troglodytes
ENSPTRG00000031120
I
0.757
PABPN1L
Pteropus vampyrus
ENSPVAG00000002716
I
0.814
EPAB2_RAT
Rattus norvegicus
ENSRNOG00000029558
I
0.743
PABPN1L
Sus scrofa
ENSSSCG00000002647
N
0.789
PABPN1L
Tursiops truncatus
ENSTTRG00000004691
N
0.829