PABPN1 (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000006242 T37652_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000010081 RRM 54 123

Links

Other RRM family RBPs
Other Gallus gallus RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.871
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.871
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.843
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.831
PABPN1L Bos taurus ENSBTAG00000023752 N 0.829
LOC100051357 Equus caballus ENSECAG00000000378 I 0.803
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.800
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.800
PABPN1L Homo sapiens ENSG00000205022 I 0.800
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.800
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.800
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.800
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.800
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.800
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.800
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.786
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.771
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.771
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.761
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.761
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.757
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.757
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.757
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.757
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.757
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.757
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.757
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.757
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.757
LOC100055599 Equus caballus ENSECAG00000011652 I 0.757
PABPN1 Homo sapiens ENSG00000100836 D 0.757
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.757
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.757
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.757
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.757
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.757
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.757
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.757
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.757
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.757
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.757
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.757
pabpn1 Danio rerio ENSDARG00000045373 I 0.746
AAH73657 Xenopus laevis AAH73657 I 0.743
AAH45063 Xenopus laevis AAH45063 I 0.743
AAR26262 Xenopus laevis AAR26262 I 0.743
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.743
Q9DDY9 Xenopus laevis Q9DDY9 I 0.743
AAG36902 Xenopus laevis AAG36902 I 0.743
AAO33927 Xenopus laevis AAO33927 N 0.743
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.743
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.743
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.743
Q804A5 Xenopus laevis Q804A5 N 0.743
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.732
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.732
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.732
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.732
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.729
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.729
2JWN_B Xenopus laevis 2JWN_B I 0.729
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.729
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.729
2JWN_A Xenopus laevis 2JWN_A I 0.729
AAI70309 Xenopus laevis AAI70309 I 0.729
AAR26263 Xenopus laevis AAR26263 I 0.729
AAI70311 Xenopus laevis AAI70311 I 0.729
Q6TY21 Xenopus laevis Q6TY21 I 0.729
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.718
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.718
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.714
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.714
PHUM037550 Pediculus humanus PHUM037550 I 0.714
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.714
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.700
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.700
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.700
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.700
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.700
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.700
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700