PABPN1L (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000005597 T39958_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000005129 RRM 143 212

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.914
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.900
PABPN1L Bos taurus ENSBTAG00000023752 N 0.900
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.873
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.873
LOC100051357 Equus caballus ENSECAG00000000378 I 0.859
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.857
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.857
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.829
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.829
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.829
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.814
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.814
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.803
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.800
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.800
PABPN1 Gallus gallus ENSGALG00000006242 I 0.800
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.800
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.800
PABPN1L Homo sapiens ENSG00000205022 I 0.800
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.771
Q804A5 Xenopus laevis Q804A5 N 0.729
AAO33927 Xenopus laevis AAO33927 N 0.729
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.714
AAR26263 Xenopus laevis AAR26263 I 0.714
2JWN_A Xenopus laevis 2JWN_A I 0.714
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.714
AAI70309 Xenopus laevis AAI70309 I 0.714
2JWN_B Xenopus laevis 2JWN_B I 0.714
AAI70311 Xenopus laevis AAI70311 I 0.714
Q6TY21 Xenopus laevis Q6TY21 I 0.714
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.704
pabpn1 Danio rerio ENSDARG00000045373 I 0.704
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.700
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.700
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.700
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.700
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.700
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.700
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.700
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.700
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.700
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.700
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.700
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.700
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.700
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.700
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.700
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.700
PABPN1 Homo sapiens ENSG00000100836 D 0.700
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.700
LOC100055599 Equus caballus ENSECAG00000011652 I 0.700
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.700
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.700
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.700
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.700