CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Rbm16
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000016919
T41112_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000022872
RRM
477
543
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIK
ENSRNOP00000062541
RRM
478
544
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIK
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH89292
Xenopus laevis
AAH89292
N
0.896
Ame_R017029
Ailuropoda melanoleuca
Ame_R017029
N
0.985
Ame_R017528
Ailuropoda melanoleuca
Ame_R017528
N
0.731
SCAF8
Anolis carolinensis
ENSACAG00000005282
N
0.955
SFRS15
Bos taurus
ENSBTAG00000018855
N
0.731
Q6JDJ9_CANFA
Canis familiaris
ENSCAFG00000000570
N
0.985
SCAF4
Canis familiaris
ENSCAFG00000008863
N
0.731
LOC100392289
Callithrix jacchus
ENSCJAG00000008993
N
0.731
LOC100390484
Callithrix jacchus
ENSCJAG00000012631
N
0.970
SCAF4
Cavia porcellus
ENSCPOG00000012443
N
0.731
ENSCPOG00000022216
Cavia porcellus
ENSCPOG00000022216
N
0.985
SCAF8
Danio rerio
ENSDARG00000074786
N
0.940
Scaf4
Dipodomys ordii
ENSDORG00000013851
N
0.731
LOC100061852
Equus caballus
ENSECAG00000005540
N
0.985
SFRS15
Equus caballus
ENSECAG00000014248
N
0.731
SCAF4
Erinaceus europaeus
ENSEEUG00000015913
N
0.731
SCAF4
Echinops telfairi
ENSETEG00000000583
N
0.716
SCAF4
Felis catus
ENSFCAG00000002228
N
0.731
SCAF4
Homo sapiens
ENSG00000156304
N
0.731
SCAF8
Homo sapiens
ENSG00000213079
N
0.985
SCAF8
Gasterosteus aculeatus
ENSGACG00000006909
N
0.896
RBM16
Gallus gallus
ENSGALG00000013635
N
0.955
Q5F447_CHICK
Gallus gallus
ENSGALG00000015850
N
0.716
SCAF8
Gorilla gorilla
ENSGGOG00000008645
N
0.985
SCAF4
Gorilla gorilla
ENSGGOG00000015557
N
0.731
SCAF8
Loxodonta africana
ENSLAFG00000000022
N
0.985
SCAF4
Loxodonta africana
ENSLAFG00000010710
N
0.731
SCAF8
Meleagris gallopavo
ENSMGAG00000012762
N
0.955
SCAF4
Meleagris gallopavo
ENSMGAG00000014515
N
0.716
SCAF4
Myotis lucifugus
ENSMLUG00000011472
N
0.731
SCAF4
Macaca mulatta
ENSMMUG00000001712
N
0.731
SCAF8
Macaca mulatta
ENSMMUG00000015163
N
0.985
SCAF8
Monodelphis domestica
ENSMODG00000008301
N
0.985
SCAF4
Monodelphis domestica
ENSMODG00000021040
N
0.731
Scaf4
Mus musculus
ENSMUSG00000022983
N
0.731
Scaf8
Mus musculus
ENSMUSG00000046201
N
1.000
SCAF4
Oryctolagus cuniculus
ENSOCUG00000008336
N
0.731
SCAF8
Oryctolagus cuniculus
ENSOCUG00000026063
N
0.985
SCAF4
Ochotona princeps
ENSOPRG00000007016
N
0.731
SCAF8
Ochotona princeps
ENSOPRG00000018413
N
0.985
SCAF8
Oryzias latipes
ENSORLG00000017358
N
0.851
SCAF4
Procavia capensis
ENSPCAG00000009998
N
0.731
SCAF8
Procavia capensis
ENSPCAG00000013044
N
0.926
ENSPPYG00000011355
Pongo pygmaeus
ENSPPYG00000011355
N
0.731
ENSPPYG00000017121
Pongo pygmaeus
ENSPPYG00000017121
N
0.985
XR_025194.1
Pan troglodytes
ENSPTRG00000013848
N
0.731
SCAF8
Pan troglodytes
ENSPTRG00000018727
N
0.985
SCAF4
Pteropus vampyrus
ENSPVAG00000005220
N
0.731
SCAF8
Pteropus vampyrus
ENSPVAG00000005582
N
0.985
SFR15_RAT
Rattus norvegicus
ENSRNOG00000002104
N
0.731
SCAF4
Sorex araneus
ENSSARG00000009994
N
0.716
SCAF8
Sus scrofa
ENSSSCG00000004070
N
0.985
SCAF4
Spermophilus tridecemlineatus
ENSSTOG00000004450
N
0.731
RBM16
Taeniopygia guttata
ENSTGUG00000011151
N
0.955
SFRS15
Taeniopygia guttata
ENSTGUG00000013464
N
0.716
SCAF8
Tetraodon nigroviridis
ENSTNIG00000016885
N
0.910
SCAF8
Takifugu rubripes
ENSTRUG00000009243
N
0.910
SCAF4
Tarsius syrichta
ENSTSYG00000011344
N
0.731
SCAF4
Tursiops truncatus
ENSTTRG00000010963
N
0.731
SCAF8
Vicugna pacos
ENSVPAG00000012465
N
0.985
rbm16
Xenopus tropicalis
ENSXETG00000013132
N
0.896