cassava12985.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava12985.valid.m1 T49121_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12985.valid.m1 RRM 215 285
cassava12985.valid.m1 RRM 295 363
cassava12985.valid.m1 RRM 392 459

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29709.m001182 Ricinus communis 29709.m001182 N 0.966
AC202489_30 Medicago truncatula AC202489_30 N 0.856
AT2G44710 Arabidopsis thaliana AT2G44710-TAIR-G N 0.762
BRADI5G17270 Brachypodium distachyon BRADI5G17270 N 0.750
cassava12984.valid.m1 Manihot esculenta cassava12984.valid.m1 N 1.000
Cucsa.256720 Cucumis sativus Cucsa.256720 N 0.899
XM_002880085.1 Arabidopsis lyrata fgenesh2_kg.4__2661__AT2G44710.1 N 0.767
Glyma03g25630.1 Glycine max Glyma03g25630.1 N 0.731
Glyma07g13210.1 Glycine max Glyma07g13210.1 N 0.726
Glyma09g38020.1 Glycine max Glyma09g38020.1 N 0.784
Glyma18g48360.1 Glycine max Glyma18g48360.1 N 0.788
GRMZM2G019919 Zea mays GRMZM2G019919 N 0.746
GSVIVG00015774001 Vitis vinifera GSVIVG00015774001 N 0.734
GSVIVG00018314001 Vitis vinifera GSVIVG00018314001 N 0.962
LOC_Os04g45930 Oryza sativa LOC_Os04g45930 N 0.793
MDP0000173498 Malus x domestica MDP0000173498 N 0.856
Medtr7g092780 Medicago truncatula Medtr7g092780 N 0.726
mgf012382m Mimulus guttatus mgf012382m N 0.823
PDK_20s1454181g001 Phoenix dactylifera PDK_20s1454181g001 N 0.889
PK21303.1 Cannabis sativa PK21303.1 N 0.889
B9GP81_POPTR Populus trichocarpa POPTR_0002s14050 N 0.957
B9MV49_POPTR Populus trichocarpa POPTR_0014s05040 N 0.928
ppa002214m Prunus persica ppa002214m N 0.894
Sb06g024100 Sorghum bicolor Sb06g024100 N 0.769