MDP0000173498 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000173498 T57382_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000173498 RRM 229 299
MDP0000173498 RRM 309 377
MDP0000173498 RRM 406 473

Links

Other RRM family RBPs
Other Malus x domestica RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002214m Prunus persica ppa002214m N 0.933
GSVIVG00018314001 Vitis vinifera GSVIVG00018314001 N 0.871
B9GP81_POPTR Populus trichocarpa POPTR_0002s14050 N 0.861
Cucsa.256720 Cucumis sativus Cucsa.256720 N 0.861
29709.m001182 Ricinus communis 29709.m001182 N 0.856
cassava12985.valid.m1 Manihot esculenta cassava12985.valid.m1 N 0.856
cassava12984.valid.m1 Manihot esculenta cassava12984.valid.m1 N 0.856
B9MV49_POPTR Populus trichocarpa POPTR_0014s05040 N 0.841
PK21303.1 Cannabis sativa PK21303.1 N 0.832
PDK_20s1454181g001 Phoenix dactylifera PDK_20s1454181g001 N 0.822
mgf012382m Mimulus guttatus mgf012382m N 0.804
AC202489_30 Medicago truncatula AC202489_30 N 0.793
LOC_Os04g45930 Oryza sativa LOC_Os04g45930 N 0.750
Sb06g024100 Sorghum bicolor Sb06g024100 N 0.740
Glyma18g48360.1 Glycine max Glyma18g48360.1 N 0.740
AT2G44710 Arabidopsis thaliana AT2G44710-TAIR-G N 0.738
XM_002880085.1 Arabidopsis lyrata fgenesh2_kg.4__2661__AT2G44710.1 N 0.733
Glyma09g38020.1 Glycine max Glyma09g38020.1 N 0.726
GSVIVG00015774001 Vitis vinifera GSVIVG00015774001 N 0.715
GRMZM2G019919 Zea mays GRMZM2G019919 N 0.713
BRADI5G17270 Brachypodium distachyon BRADI5G17270 N 0.707