CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gww1.2.1.733.1
(
Pichia stipitis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gww1.2.1.733.1
T50305_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gww1.2.1.733.1
RRM
81
150
LYVGGLHKSVTDDMLKDLFSVAGGIKSVKILNDKNKPGFNYAFIEFDTNQAADMALHTLNGRIINNSEIK
e_gww1.2.1.733.1
RRM
173
243
IFVGDLSPEVDDETLTRAFSKFQTLKQAHVMWDMQTSRSRGYGFVTFGTQADAELALQTMNGEWINGRAIR
e_gww1.2.1.733.1
RRM
358
422
VYLGNIAHFTQQNELIPLLQNFGFIVDFKFHPERGCAFVKYDSHERAALAIVQLAGFTVNGRPLK
Links
Other
RRM
family RBPs
Other
Pichia stipitis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
caz
Drosophila melanogaster
FBgn0011571
N
0.000
GF19034
Drosophila ananassae
FBgn0096046
N
0.000
GH12560
Drosophila grimshawi
FBgn0120039
N
0.000
GI11213
Drosophila mojavensis
FBgn0133974
N
0.000
GL21338
Drosophila persimilis
FBgn0158931
N
0.000
GM13418
Drosophila sechellia
FBgn0168349
N
0.000
GD17272
Drosophila simulans
FBgn0188834
N
0.000
GK25719
Drosophila willistoni
FBgn0227678
N
0.000
GA22827-RA
Drosophila pseudoobscura
FBgn0244229
N
0.000