CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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orf19.7368
(
Candida albicans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
orf19.7368
T29910_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
orf19.7368
RRM
81
151
LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIK
orf19.7368
RRM
175
245
IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIR
orf19.7368
RRM
414
478
VYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNLNGRPLK
Links
Other
RRM
family RBPs
Other
Candida albicans
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cd36_85810
Candida dubliniensis
Cd36_85810
N
0.976
CTRG_02448
Candida tropicalis
CTRG_02448
N
0.908
CPAG_02887
Candida parapsilosis
CPAG_02887
N
0.807
LELG_02781
Lodderomyces elongisporus
LELG_02781
N
0.797
e_gww1.2.1.733.1
Pichia stipitis
e_gww1.2.1.733.1
N
0.797
DEHA0A10274g
Debaryomyces hansenii
DEHA0A10274g
N
0.768
CLUG_04765
Candida lusitaniae
CLUG_04765
N
0.720