CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPAG_02887
(
Candida parapsilosis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPAG_02887
T28836_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPAG_02887.1
RRM
56
125
LYVGNLPKSASEEQISELFSVSKPIKSIKLLNDKNKLGFNYAFIEFDDNQEADMALSTLNGKLLNNCEIR
CPAG_02887.1
RRM
148
218
LFVGDLSSEVNDEALKKAFNKFDSFKEAHVMWDMQTSRSRGYGFVTFSKQEDAELALQTMNGAWLGGRAIR
CPAG_02887.1
RRM
334
398
VYLGNIAHATQQQEMLPLLQNFGFIVDFKFHPEKGCAFVKYDSHERAALAIIQLAGFNLNGRPLK
Links
Other
RRM
family RBPs
Other
Candida parapsilosis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LELG_02781
Lodderomyces elongisporus
LELG_02781
N
0.826
CTRG_02448
Candida tropicalis
CTRG_02448
N
0.812
Cd36_85810
Candida dubliniensis
Cd36_85810
N
0.812
orf19.7368
Candida albicans
orf19.7368
N
0.807
e_gww1.2.1.733.1
Pichia stipitis
e_gww1.2.1.733.1
N
0.754
DEHA0A10274g
Debaryomyces hansenii
DEHA0A10274g
N
0.734