CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DEHA0A10274g
(
Debaryomyces hansenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DEHA0A10274g
T29158_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DEHA0A10274g.1
RRM
100
169
LYVGGLHKSVSDEMLKDLFAVAGAIQSVKILNDKNRPGFNYAFIEFENTQSADMALHTLNGRIINNSEIK
DEHA0A10274g.1
RRM
191
261
IFVGDLSPEVDDETLNKSFSKFPSLKQAHVMWDMQTSRSRGYGFVSFGQQADAELALQTMNGEWISGRAIR
DEHA0A10274g.1
RRM
368
432
VYLGNIAHFTQQTDLIPLLQNFGFIVDFKFHPERGCAFVKYDSHERAALAIVQLAGFTINGRPLK
Links
Other
RRM
family RBPs
Other
Debaryomyces hansenii
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gww1.2.1.733.1
Pichia stipitis
e_gww1.2.1.733.1
N
0.898
CTRG_02448
Candida tropicalis
CTRG_02448
N
0.787
Cd36_85810
Candida dubliniensis
Cd36_85810
N
0.773
orf19.7368
Candida albicans
orf19.7368
N
0.768
CPAG_02887
Candida parapsilosis
CPAG_02887
N
0.734
LELG_02781
Lodderomyces elongisporus
LELG_02781
N
0.725
CLUG_04765
Candida lusitaniae
CLUG_04765
N
0.723