CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cd36_85810
(
Candida dubliniensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cd36_85810
T55772_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cd36_85810
RRM
72
142
LYVGNLPKSASEEMIQELFSVDGNPVKTIKVLNDKNKAGFNYAFIEYDTNEAADMALNTLNGRLVDNVEIK
Cd36_85810
RRM
166
236
IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIR
Cd36_85810
RRM
401
465
VYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNLNGRPLK
Links
Other
RRM
family RBPs
Other
Candida dubliniensis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.7368
Candida albicans
orf19.7368
N
0.976
CTRG_02448
Candida tropicalis
CTRG_02448
N
0.908
CPAG_02887
Candida parapsilosis
CPAG_02887
N
0.812
e_gww1.2.1.733.1
Pichia stipitis
e_gww1.2.1.733.1
N
0.807
LELG_02781
Lodderomyces elongisporus
LELG_02781
N
0.797
DEHA0A10274g
Debaryomyces hansenii
DEHA0A10274g
N
0.773
CLUG_04765
Candida lusitaniae
CLUG_04765
N
0.720