CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_550102
(
Capitella teleta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_550102
T51290_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_550102
RRM
26
96
VFVGNIPYEASEEQLKEVFQQAGPVISFRLVYDRETGKPKGYGFCEYQDVETAQSAMRNLNNYDYNGRPLR
Links
Other
RRM
family RBPs
Other
Capitella teleta
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT3G12130
Arabidopsis thaliana
AT3G12130-TAIR-G
N
0.000
AT5G06770
Arabidopsis thaliana
AT5G06770-TAIR-G
N
0.000
Cucsa.263980
Cucumis sativus
Cucsa.263980
N
0.000
XM_002884838.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3001010
N
0.000
GSVIVG00001369001
Vitis vinifera
GSVIVG00001369001
N
0.000
GSVIVG00025360001
Vitis vinifera
GSVIVG00025360001
N
0.000
GSVIVG00033508001
Vitis vinifera
GSVIVG00033508001
N
0.000
B9HAC6_POPTR
Populus trichocarpa
POPTR_0006s20620
N
0.000