GSVIVG00025360001 (Vitis vinifera)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GSVIVG00025360001 T00168_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00025360001 CCCH ZF 38 62
GSVIVT00025360001 KH 119 181
GSVIVT00025360001 CCCH ZF 210 235

Links

Other CCCH ZF,KH family RBPs
Other Vitis vinifera RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.921
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.921
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.842
AT3G12130 Arabidopsis thaliana AT3G12130-TAIR-G N 0.807
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.793
XM_002873232.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000515 N 0.781
AT5G06770 Arabidopsis thaliana AT5G06770-TAIR-G N 0.781
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.767
B9HAC6_POPTR Populus trichocarpa POPTR_0006s20620 N 0.750
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.741
MDP0000263392 Malus x domestica MDP0000263392 N 0.733
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.724
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.724
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.724
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.716
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.716
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.716
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.716
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.707