B9HAC6_POPTR (Populus trichocarpa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		POPTR_0006s20620 T00175_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s20620.1 CCCH ZF 35 61
POPTR_0006s20620.1 KH 110 172
POPTR_0006s20620.1 CCCH ZF 201 226

Links

Other CCCH ZF,KH family RBPs
Other Populus trichocarpa RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.793
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.784
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.750
XM_002873232.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000515 N 0.733
AT3G12130 Arabidopsis thaliana AT3G12130-TAIR-G N 0.733
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.733
AT5G06770 Arabidopsis thaliana AT5G06770-TAIR-G N 0.724