Cucsa.263980 (Cucumis sativus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Cucsa.263980 T00193_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.263980.1 CCCH ZF 34 58
Cucsa.263980.1 CCCH ZF 102 127
Cucsa.263980.1 KH 180 242
Cucsa.263980.1 CCCH ZF 272 297
Cucsa.263980.2 CCCH ZF 33 58
Cucsa.263980.2 KH 111 173
Cucsa.263980.2 CCCH ZF 203 228

Links

Other CCCH ZF,KH family RBPs
Other Cucumis sativus RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.914
ppa009316m Prunus persica ppa009316m N 0.914
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.913
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.900
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.900
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.893
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.893
27843.m000161 Ricinus communis 27843.m000161 N 0.893
27843.m000162 Ricinus communis 27843.m000162 N 0.886
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.879
MDP0000217837 Malus x domestica MDP0000217837 N 0.871
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.871
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.864
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.864
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.861
ppa009199m Prunus persica ppa009199m N 0.857
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.845
MDP0000202971 Malus x domestica MDP0000202971 N 0.836
MDP0000176924 Malus x domestica MDP0000176924 N 0.836
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.825
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.824
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.824
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.824
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.824
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.824
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.824
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.823
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.816
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.814
mgf010445m Mimulus guttatus mgf010445m N 0.814
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.810
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.810
SB04G006450 Sorghum bicolor Sb04g006450 N 0.807
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.807
mgf003025m Mimulus guttatus mgf003025m N 0.807
SB06G032000 Sorghum bicolor Sb06g032000 N 0.801
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.800
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.800
MDP0000263392 Malus x domestica MDP0000263392 N 0.800
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.797
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.794
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.793
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.793
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.766
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.752
mgf001428m Mimulus guttatus mgf001428m N 0.752
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.750
MDP0000120315 Malus x domestica MDP0000120315 N 0.743
MDP0000275117 Malus x domestica MDP0000275117 N 0.743
MDP0000130160 Malus x domestica MDP0000130160 N 0.743
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.741
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.739
GSVIVG00001369001 Vitis vinifera GSVIVG00001369001 N 0.733
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.732
XM_002884838.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001010 N 0.716
XM_002873232.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000515 N 0.707
chr5.LjT10N02.330.nd Lotus japonicus chr5.LjT10N02.330.nd N 0.704