mgf023970m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf023970m T53794_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf023970m RRM 95 164
mgf023970m RRM 184 249
mgf023970m RRM 425 506

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28350.m000106 Ricinus communis 28350.m000106 N 0.853
29693.m002077 Ricinus communis 29693.m002077 N 0.858
30147.m014409 Ricinus communis 30147.m014409 N 0.794
XM_002893514.1 Arabidopsis lyrata Al_scaffold_0001_2998 N 0.807
ML5 Arabidopsis thaliana AT1G29400-TAIR-G N 0.812
BGIOSIBCE006715 Oryza indica BGIOSIBCE006715 N 0.743
BGIOSIBCE007174 Oryza indica BGIOSIBCE007174 N 0.748
BGIOSIBCE008451 Oryza indica BGIOSIBCE008451 N 0.789
BRADI1G52280 Brachypodium distachyon BRADI1G52280 N 0.807
BRADI3G10967 Brachypodium distachyon BRADI3G10967 N 0.748
BRADI3G44380 Brachypodium distachyon BRADI3G44380 N 0.766
cassava12910.valid.m1 Manihot esculenta cassava12910.valid.m1 N 0.748
cassava13647.valid.m1 Manihot esculenta cassava13647.valid.m1 N 0.720
cassava13648.valid.m1 Manihot esculenta cassava13648.valid.m1 N 0.720
cassava42352.valid.m1 Manihot esculenta cassava42352.valid.m1 N 0.872
cassava42353.valid.m1 Manihot esculenta cassava42353.valid.m1 N 0.872
cassava42354.valid.m1 Manihot esculenta cassava42354.valid.m1 N 0.872
cassava42355.valid.m1 Manihot esculenta cassava42355.valid.m1 N 0.872
cassava44897.m1 Manihot esculenta cassava44897.m1 N 0.872
cassava6429.valid.m1 Manihot esculenta cassava6429.valid.m1 N 0.876
chr6.CM0037.1500.nc Lotus japonicus chr6.CM0037.1500.nc N 0.858
Cucsa.047430 Cucumis sativus Cucsa.047430 N 0.826
Cucsa.185450 Cucumis sativus Cucsa.185450 N 0.858
Cucsa.349210 Cucumis sativus Cucsa.349210 N 0.794
estExt_fgenesh2_pg.C_120305 Selaginella moellendorfii estExt_fgenesh2_pg.C_120305 N 0.803
estExt_gwp_gw1.C_780034 Physcomitrella patens estExt_gwp_gw1.C_780034 N 0.830
e_gw1.12.24.1 Selaginella moellendorfii e_gw1.12.24.1 N 0.821
e_gw1.271.39.1 Physcomitrella patens e_gw1.271.39.1 N 0.844
e_gw1.78.82.1 Physcomitrella patens e_gw1.78.82.1 N 0.830
XM_002870025.1 Arabidopsis lyrata fgenesh2_kg.7__2489__AT4G18120.1 N 0.702
Glyma08g01040.1 Glycine max Glyma08g01040.1 N 0.706
Glyma08g42230.1 Glycine max Glyma08g42230.1 N 0.858
Glyma09g11630.1 Glycine max Glyma09g11630.1 N 0.853
Glyma15g23420.1 Glycine max Glyma15g23420.1 N 0.862
Glyma18g12730.1 Glycine max Glyma18g12730.1 N 0.862
GRMZM2G004455 Zea mays GRMZM2G004455 N 0.794
GRMZM2G012302 Zea mays GRMZM2G012302 N 0.734
GRMZM2G154229 Zea mays GRMZM2G154229 N 0.798
GSVIVG00001086001 Vitis vinifera GSVIVG00001086001 N 0.803
GSVIVG00008646001 Vitis vinifera GSVIVG00008646001 N 0.817
GSVIVG00021379001 Vitis vinifera GSVIVG00021379001 N 0.872
LOC_Os02g21430 Oryza sativa LOC_Os02g21430 N 0.743
LOC_Os02g31290 Oryza sativa LOC_Os02g31290 N 0.748
LOC_Os02g48790 Oryza sativa LOC_Os02g48790 N 0.789
Medtr2g056620 Medicago truncatula Medtr2g056620 N 0.853
mgf000415m Mimulus guttatus mgf000415m N 0.789
mgf005765m Mimulus guttatus mgf005765m N 0.853
mgf014747m Mimulus guttatus mgf014747m N 0.844
mgf015667m Mimulus guttatus mgf015667m N 0.789
PK15886.1 Cannabis sativa PK15886.1 N 0.784
PK19379.1 Cannabis sativa PK19379.1 N 0.734
PK24656.1 Cannabis sativa PK24656.1 N 0.858
PK25465.1 Cannabis sativa PK25465.1 N 0.853
B9GMT5_POPTR Populus trichocarpa POPTR_0001s13030 N 0.761
B9GT36_POPTR Populus trichocarpa POPTR_0002s06070 N 0.844
B9GZ23_POPTR Populus trichocarpa POPTR_0003s16110 N 0.739
B9H813_POPTR Populus trichocarpa POPTR_0005s22370 N 0.835
B9I403_POPTR Populus trichocarpa POPTR_0012s10900 N 0.748
ppa000845m Prunus persica ppa000845m N 0.775
ppa000997m Prunus persica ppa000997m N 0.761
ppa001307m Prunus persica ppa001307m N 0.862
ppa001327m Prunus persica ppa001327m N 0.858
SB04G021130 Sorghum bicolor Sb04g021130 N 0.748
SB10G000350 Sorghum bicolor Sb10g000350 N 0.798