CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G303915
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G303915
T54204_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
AT1G76460-TAIR-G
M239_0.6
Arabidopsis thaliana
DGWGUGD
RNAcompete
Ray et al.(2013)
RNCMPT00284
0.765
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G303915_P01
RRM
49
116
VFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQNPNPVIAGRR
GRMZM2G303915_P02
RRM
49
116
VFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQNPNPVIAGRR
GRMZM2G303915_P03
RRM
49
116
VFVGGLAWETPSEGLRQHFDVYGEILEAVVITDRETGRSKGYGFVIFRDPDAAARAVQNPNPVIAGRR
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
mgf008200m
Mimulus guttatus
mgf008200m
N
0.000
Sjc_0041920
Schistosoma japonicum
Sjc_0041920
N
0.000
Sjc_0049130
Schistosoma japonicum
Sjc_0049130
N
0.000
Sjc_0072920
Schistosoma japonicum
Sjc_0072920
N
0.000
Sjc_0073190
Schistosoma japonicum
Sjc_0073190
N
0.000
Sjc_0087940
Schistosoma japonicum
Sjc_0087940
N
0.000
Sjc_0110320
Schistosoma japonicum
Sjc_0110320
N
0.000
Sjc_0117630
Schistosoma japonicum
Sjc_0117630
N
0.000