SB09G004590 (Sorghum bicolor)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Sb09g004590 T62267_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb09g004590.1 YTH 134 224

Links

Other YTH family RBPs
Other Sorghum bicolor RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.000
29848.m004475 Ricinus communis 29848.m004475 N 0.000
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.000
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.000
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.000
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.000
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.000
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.000
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.000
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.000
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.000
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.000
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.000
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.000
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.000
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.000
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.000
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.000
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.000
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.000
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.000
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.000
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.000
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.000
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.000
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.000
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.000
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.000
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.000
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.000
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.000
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.000
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.000
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.000
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.000
MDP0000256723 Malus x domestica MDP0000256723 N 0.000
MDP0000870155 Malus x domestica MDP0000870155 N 0.000
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.000
mgf005494m Mimulus guttatus mgf005494m N 0.000
mgf014721m Mimulus guttatus mgf014721m N 0.000
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.000
PK15383.1 Cannabis sativa PK15383.1 N 0.000
PK23390.1 Cannabis sativa PK23390.1 N 0.000
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.000
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.000
ppa012111m Prunus persica ppa012111m N 0.000
ppa012147m Prunus persica ppa012147m N 0.000
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.000
SB04G035540 Sorghum bicolor Sb04g035540 N 0.000
SB10G005960 Sorghum bicolor Sb10g005960 N 0.000