29889.m003364 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29889.m003364 T62291_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29889.m003364 YTH 430 520

Links

Other YTH family RBPs
Other Ricinus communis RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.934
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.934
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.912
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.901
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.901
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.901
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.901
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.901
ppa018635m Prunus persica ppa018635m N 0.901
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.879
mgf015583m Mimulus guttatus mgf015583m N 0.868
MDP0000306387 Malus x domestica MDP0000306387 N 0.868
MDP0000132385 Malus x domestica MDP0000132385 N 0.868
mgf014143m Mimulus guttatus mgf014143m N 0.868
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.868
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.857
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.857
mgf017987m Mimulus guttatus mgf017987m N 0.857
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.846
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.846
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.846
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.846
PK02315.1 Cannabis sativa PK02315.1 N 0.846
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.846
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.835
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.824
ppa003664m Prunus persica ppa003664m N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.824
29955.m001158 Ricinus communis 29955.m001158 N 0.824
MDP0000231231 Malus x domestica MDP0000231231 N 0.813
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.813
MDP0000286471 Malus x domestica MDP0000286471 N 0.813
mgf019821m Mimulus guttatus mgf019821m N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.802
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.802
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
MDP0000552419 Malus x domestica MDP0000552419 N 0.780
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
PK23104.1 Cannabis sativa PK23104.1 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.769
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
29890.m000285 Ricinus communis 29890.m000285 N 0.747
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.747
ppa002677m Prunus persica ppa002677m N 0.747
PK01736.1 Cannabis sativa PK01736.1 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
ppa003557m Prunus persica ppa003557m N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.725
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.725
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
SB09G004590 Sorghum bicolor Sb09g004590 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.703
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.703
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703