Medtr8g134440 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr8g134440 T62458_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g134440.1 YTH 386 476

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

173 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.945
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.945
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.923
ppa018635m Prunus persica ppa018635m N 0.923
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.923
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.912
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.901
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.901
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.901
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.901
MDP0000306387 Malus x domestica MDP0000306387 N 0.890
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.890
MDP0000132385 Malus x domestica MDP0000132385 N 0.890
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.890
mgf014143m Mimulus guttatus mgf014143m N 0.868
29889.m003364 Ricinus communis 29889.m003364 N 0.868
mgf015583m Mimulus guttatus mgf015583m N 0.868
mgf017987m Mimulus guttatus mgf017987m N 0.868
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.857
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.857
PK02315.1 Cannabis sativa PK02315.1 N 0.846
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.835
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.835
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.835
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.835
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.824
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.824
SB03G031190 Sorghum bicolor Sb03g031190 N 0.813
PK23104.1 Cannabis sativa PK23104.1 N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.813
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.813
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.813
ppa003664m Prunus persica ppa003664m N 0.813
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.802
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.802
MDP0000286471 Malus x domestica MDP0000286471 N 0.802
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.802
MDP0000231231 Malus x domestica MDP0000231231 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
29929.m004643 Ricinus communis 29929.m004643 N 0.791
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.791
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.791
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.780
MDP0000248088 Malus x domestica MDP0000248088 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
MDP0000552419 Malus x domestica MDP0000552419 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.769
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
mgf019821m Mimulus guttatus mgf019821m N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.758
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.758
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.758
29765.m000746 Ricinus communis 29765.m000746 N 0.758
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
PK05579.1 Cannabis sativa PK05579.1 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.758
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
ppa002677m Prunus persica ppa002677m N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.747
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.747
ppa003557m Prunus persica ppa003557m N 0.747
PK01736.1 Cannabis sativa PK01736.1 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.747
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.736
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.736
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.725
SB06G027960 Sorghum bicolor Sb06g027960 N 0.725
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.725
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
SB09G004590 Sorghum bicolor Sb09g004590 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
XM_002892481.1 Arabidopsis lyrata fgenesh2_kg.1__1037__AT1G09810.1 N 0.714
ECT11 Arabidopsis thaliana AT1G09810-TAIR-G N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.703