cassava42993.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava42993.valid.m1 T62344_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava42993.valid.m1 YTH 392 482

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

210 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 1.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.934
29889.m003364 Ricinus communis 29889.m003364 N 0.934
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.934
ppa018635m Prunus persica ppa018635m N 0.934
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.923
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.923
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.912
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.912
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.912
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.901
MDP0000306387 Malus x domestica MDP0000306387 N 0.901
MDP0000132385 Malus x domestica MDP0000132385 N 0.901
mgf014143m Mimulus guttatus mgf014143m N 0.890
mgf015583m Mimulus guttatus mgf015583m N 0.890
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.890
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.890
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.890
mgf017987m Mimulus guttatus mgf017987m N 0.879
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.879
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.879
PK02315.1 Cannabis sativa PK02315.1 N 0.868
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.868
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.857
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.857
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.857
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.857
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.846
ppa003664m Prunus persica ppa003664m N 0.835
MDP0000231231 Malus x domestica MDP0000231231 N 0.824
MDP0000286471 Malus x domestica MDP0000286471 N 0.824
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.824
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.824
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.824
SB07G024500 Sorghum bicolor Sb07g024500 N 0.813
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.813
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.813
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
mgf019821m Mimulus guttatus mgf019821m N 0.802
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.802
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.802
PK23104.1 Cannabis sativa PK23104.1 N 0.802
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
SB07G006330 Sorghum bicolor Sb07g006330 N 0.802
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.802
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.802
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.802
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.791
PK17832.1 Cannabis sativa PK17832.1 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.791
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
MDP0000256033 Malus x domestica MDP0000256033 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
mgf014829m Mimulus guttatus mgf014829m N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
MDP0000199885 Malus x domestica MDP0000199885 N 0.780
mgf001716m Mimulus guttatus mgf001716m N 0.780
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.769
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
mgf019846m Mimulus guttatus mgf019846m N 0.769
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
MDP0000488248 Malus x domestica MDP0000488248 N 0.769
29890.m000285 Ricinus communis 29890.m000285 N 0.769
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.758
ppa002677m Prunus persica ppa002677m N 0.758
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
ppa003557m Prunus persica ppa003557m N 0.758
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.758
PK26094.1 Cannabis sativa PK26094.1 N 0.758
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.747
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.747
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.747
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.747
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.747
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.747
mgf009938m Mimulus guttatus mgf009938m N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
MDP0000488588 Malus x domestica MDP0000488588 N 0.747
SB09G000580 Sorghum bicolor Sb09g000580 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
PK01736.1 Cannabis sativa PK01736.1 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.736
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.736
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.725
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.725
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.725
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.725
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.725
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.725
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.725
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.725
MDP0000189157 Malus x domestica MDP0000189157 N 0.725
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.725
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.725
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.725
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
SB09G004590 Sorghum bicolor Sb09g004590 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.714
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.714
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.707
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.707
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
SB07G000670 Sorghum bicolor Sb07g000670 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.703